miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 86650 0.67 0.928689
Target:  5'- cCGGGACggaUGCUc--CGGCCCGAGCc -3'
miRNA:   3'- cGCCUUGa--GCGAcuaGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 92255 0.7 0.818755
Target:  5'- gGCGGcg-UCGCUGGcggCGGCgCCGGGCGa -3'
miRNA:   3'- -CGCCuugAGCGACUa--GCUG-GGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 92306 0.68 0.906345
Target:  5'- gGCGGGGCUgggCGCgGGcggCGgggGCCCGGGCGg -3'
miRNA:   3'- -CGCCUUGA---GCGaCUa--GC---UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 92401 1.1 0.003618
Target:  5'- aGCGGAACUCGCUGAUCGACCCGAGCAc -3'
miRNA:   3'- -CGCCUUGAGCGACUAGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 92699 0.69 0.843283
Target:  5'- gGUGGAcaACcCGCUGAcCGugUCGAGCc -3'
miRNA:   3'- -CGCCU--UGaGCGACUaGCugGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 93317 0.66 0.938021
Target:  5'- gGCGacuaccuGAGCaCGCUGcaCGGCCUGAGCAc -3'
miRNA:   3'- -CGC-------CUUGaGCGACuaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 94268 0.72 0.698399
Target:  5'- cGCGucAUUUGCgcgGcgCGGCCCGAGCGg -3'
miRNA:   3'- -CGCcuUGAGCGa--CuaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 95761 0.66 0.943048
Target:  5'- cGCGGGGCggcggcCGCgacggCGGCCgGGGCGa -3'
miRNA:   3'- -CGCCUUGa-----GCGacua-GCUGGgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 99875 0.69 0.843283
Target:  5'- uCGGccGACUCcaaggaGCUGAUCcACCCGGGCu -3'
miRNA:   3'- cGCC--UUGAG------CGACUAGcUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 104438 0.67 0.933704
Target:  5'- cCGGAcgccGC-CGCgGG-CGGCCCGAGCc -3'
miRNA:   3'- cGCCU----UGaGCGaCUaGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 104624 0.66 0.959049
Target:  5'- uCGGccagcAGCUCGUUG-UCGcGCgCCGAGCAg -3'
miRNA:   3'- cGCC-----UUGAGCGACuAGC-UG-GGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 104740 0.66 0.938489
Target:  5'- gGUGGAGCgcucgaucUCGUgguagcGGUCGGCCCGccGGCGc -3'
miRNA:   3'- -CGCCUUG--------AGCGa-----CUAGCUGGGC--UCGU- -5'
10776 5' -55.7 NC_002794.1 + 108443 0.73 0.668658
Target:  5'- gGCGGcACUCGCggcggCGGCCCGccGGCAc -3'
miRNA:   3'- -CGCCuUGAGCGacua-GCUGGGC--UCGU- -5'
10776 5' -55.7 NC_002794.1 + 110661 0.66 0.958691
Target:  5'- gGCGGcugcagacagugcAGCaCGCUGugGUCGucGCCCGAGUAg -3'
miRNA:   3'- -CGCC-------------UUGaGCGAC--UAGC--UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 111426 0.68 0.900192
Target:  5'- cGCGGAGC-CGCcaGAUCGGCaguCgGGGCGg -3'
miRNA:   3'- -CGCCUUGaGCGa-CUAGCUG---GgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 113490 0.69 0.835282
Target:  5'- uGCaGGAGCUCGC-GcgCGGCCgaGAGCc -3'
miRNA:   3'- -CG-CCUUGAGCGaCuaGCUGGg-CUCGu -5'
10776 5' -55.7 NC_002794.1 + 115583 0.66 0.946957
Target:  5'- aCGGGACguagCgGCUGcgGUCGACCCGcucgcccGGCGc -3'
miRNA:   3'- cGCCUUGa---G-CGAC--UAGCUGGGC-------UCGU- -5'
10776 5' -55.7 NC_002794.1 + 116076 0.66 0.959049
Target:  5'- cGCGGAGCgcucggCGCggcGGUCGucGCCgGGGUc -3'
miRNA:   3'- -CGCCUUGa-----GCGa--CUAGC--UGGgCUCGu -5'
10776 5' -55.7 NC_002794.1 + 117184 0.7 0.817911
Target:  5'- cCGGAuUUCGCgcaGAUCGgcgucggGCCCGGGCGg -3'
miRNA:   3'- cGCCUuGAGCGa--CUAGC-------UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 117614 0.67 0.928689
Target:  5'- -aGGAACUCGCcGAgCGACa-GGGCGc -3'
miRNA:   3'- cgCCUUGAGCGaCUaGCUGggCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.