miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 118251 0.68 0.887222
Target:  5'- gGCGG-GCU-GgaGGUCGGCCgGGGCGg -3'
miRNA:   3'- -CGCCuUGAgCgaCUAGCUGGgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 119362 0.68 0.900192
Target:  5'- uGCGGAccucCUCGUucgcgUGGUCGAgCUGGGCc -3'
miRNA:   3'- -CGCCUu---GAGCG-----ACUAGCUgGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 121928 0.68 0.893817
Target:  5'- cGCGGGggaagaggccgACgCGCUGAUCGagcGCCUgGAGCGc -3'
miRNA:   3'- -CGCCU-----------UGaGCGACUAGC---UGGG-CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 122750 0.68 0.893817
Target:  5'- cGCGGcaucCUCgaGCUGAUCGAgcgcuCCgCGAGCGg -3'
miRNA:   3'- -CGCCuu--GAG--CGACUAGCU-----GG-GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 123666 0.69 0.858728
Target:  5'- aGCuGGugUCGC---UCGGCCCGGGCu -3'
miRNA:   3'- -CGcCUugAGCGacuAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 126318 0.69 0.866159
Target:  5'- aGCGGAgcgugacccGCUCGCUGAccgccgucuUCGuguCCCG-GCu -3'
miRNA:   3'- -CGCCU---------UGAGCGACU---------AGCu--GGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 127812 0.69 0.866159
Target:  5'- cGCcGAGCgagCGCccgucGUCGGCCCGAGCc -3'
miRNA:   3'- -CGcCUUGa--GCGac---UAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 128208 0.87 0.117506
Target:  5'- aUGGGACUCGaCcGAUCGACCCGAGCGa -3'
miRNA:   3'- cGCCUUGAGC-GaCUAGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 128947 0.68 0.891205
Target:  5'- gGUGGAGCcugcgccggacgagUCGCUcGAUCuggugcaGAUCCGAGCGc -3'
miRNA:   3'- -CGCCUUG--------------AGCGA-CUAG-------CUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 130009 0.68 0.900192
Target:  5'- cCGGAGCgUGCgGGUCGGCCUcgcgcgagGAGCGu -3'
miRNA:   3'- cGCCUUGaGCGaCUAGCUGGG--------CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 131406 0.69 0.835282
Target:  5'- aCGGc-CUCGCccgUGAUCGGCaCCGGGCc -3'
miRNA:   3'- cGCCuuGAGCG---ACUAGCUG-GGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 131515 0.66 0.955377
Target:  5'- --cGAcCUCGCccgUGAUCGGCgCCGGGCc -3'
miRNA:   3'- cgcCUuGAGCG---ACUAGCUG-GGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 136516 0.67 0.912273
Target:  5'- aGCGGGGCgagguaGagaUGGUUGaagaGCCCGAGCAc -3'
miRNA:   3'- -CGCCUUGag----Cg--ACUAGC----UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 138713 0.66 0.943048
Target:  5'- gGCGuGGACUCGC--GUCGAgCCG-GCu -3'
miRNA:   3'- -CGC-CUUGAGCGacUAGCUgGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 145331 0.66 0.94738
Target:  5'- gGCGGcGCUCGggcccGAgcgGGCCCGAGCu -3'
miRNA:   3'- -CGCCuUGAGCga---CUag-CUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 145514 0.68 0.906345
Target:  5'- -aGGggUgCGCgaGGcCGGCCCGAGCGc -3'
miRNA:   3'- cgCCuuGaGCGa-CUaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 145624 0.73 0.618624
Target:  5'- -aGGAGCUCgGCccggaGAUCgGACCCGAGCu -3'
miRNA:   3'- cgCCUUGAG-CGa----CUAG-CUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 147224 0.67 0.923446
Target:  5'- cCGGGGCguuggCGC-GAUgGGCCCGAGa- -3'
miRNA:   3'- cGCCUUGa----GCGaCUAgCUGGGCUCgu -5'
10776 5' -55.7 NC_002794.1 + 147380 0.69 0.851101
Target:  5'- cGUGcGAGCUgcaGCUGAUCGGCUcgauccgccaCGAGCGc -3'
miRNA:   3'- -CGC-CUUGAg--CGACUAGCUGG----------GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 147801 0.71 0.746786
Target:  5'- uCGGAGCUgaCGCUGAagCGGCuCCaGAGCAc -3'
miRNA:   3'- cGCCUUGA--GCGACUa-GCUG-GG-CUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.