miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 189561 0.69 0.851101
Target:  5'- gGCGGucccGCUCGgUcGGcCGGCCCGGGCc -3'
miRNA:   3'- -CGCCu---UGAGCgA-CUaGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 187824 0.66 0.951489
Target:  5'- aGCGGAGCgCGCUcGGcUCGGCgcgCCGAGg- -3'
miRNA:   3'- -CGCCUUGaGCGA-CU-AGCUG---GGCUCgu -5'
10776 5' -55.7 NC_002794.1 + 177732 0.66 0.94034
Target:  5'- gGCGGAuccgaccgACUCGCgcgaGUCGACCggaucuuaggacaagCGGGCGu -3'
miRNA:   3'- -CGCCU--------UGAGCGac--UAGCUGG---------------GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 161575 0.67 0.917973
Target:  5'- gGCGGAGCcgucggucUCGuCUGAuUCGACUgCGGGUAa -3'
miRNA:   3'- -CGCCUUG--------AGC-GACU-AGCUGG-GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 153940 0.73 0.658676
Target:  5'- cGCGGAcACUCGCUGGcUCuacccuGGCCCG-GCGa -3'
miRNA:   3'- -CGCCU-UGAGCGACU-AG------CUGGGCuCGU- -5'
10776 5' -55.7 NC_002794.1 + 150673 0.71 0.756209
Target:  5'- cCGcGAACgaggUGCUGAUCGucggcaGCCCGAGUAc -3'
miRNA:   3'- cGC-CUUGa---GCGACUAGC------UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 150622 0.67 0.935645
Target:  5'- uGCgGGAGCUCGUgagccaGuaucccggcacgcgcGUCGACCUGGGCu -3'
miRNA:   3'- -CG-CCUUGAGCGa-----C---------------UAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 149754 0.75 0.520081
Target:  5'- gGCGGGAC-CGCUGucUCGGCCUguugGAGCGg -3'
miRNA:   3'- -CGCCUUGaGCGACu-AGCUGGG----CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 147801 0.71 0.746786
Target:  5'- uCGGAGCUgaCGCUGAagCGGCuCCaGAGCAc -3'
miRNA:   3'- cGCCUUGA--GCGACUa-GCUG-GG-CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 147380 0.69 0.851101
Target:  5'- cGUGcGAGCUgcaGCUGAUCGGCUcgauccgccaCGAGCGc -3'
miRNA:   3'- -CGC-CUUGAg--CGACUAGCUGG----------GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 147224 0.67 0.923446
Target:  5'- cCGGGGCguuggCGC-GAUgGGCCCGAGa- -3'
miRNA:   3'- cGCCUUGa----GCGaCUAgCUGGGCUCgu -5'
10776 5' -55.7 NC_002794.1 + 145624 0.73 0.618624
Target:  5'- -aGGAGCUCgGCccggaGAUCgGACCCGAGCu -3'
miRNA:   3'- cgCCUUGAG-CGa----CUAG-CUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 145514 0.68 0.906345
Target:  5'- -aGGggUgCGCgaGGcCGGCCCGAGCGc -3'
miRNA:   3'- cgCCuuGaGCGa-CUaGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 145331 0.66 0.94738
Target:  5'- gGCGGcGCUCGggcccGAgcgGGCCCGAGCu -3'
miRNA:   3'- -CGCCuUGAGCga---CUag-CUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 138713 0.66 0.943048
Target:  5'- gGCGuGGACUCGC--GUCGAgCCG-GCu -3'
miRNA:   3'- -CGC-CUUGAGCGacUAGCUgGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 136516 0.67 0.912273
Target:  5'- aGCGGGGCgagguaGagaUGGUUGaagaGCCCGAGCAc -3'
miRNA:   3'- -CGCCUUGag----Cg--ACUAGC----UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 131515 0.66 0.955377
Target:  5'- --cGAcCUCGCccgUGAUCGGCgCCGGGCc -3'
miRNA:   3'- cgcCUuGAGCG---ACUAGCUG-GGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 131406 0.69 0.835282
Target:  5'- aCGGc-CUCGCccgUGAUCGGCaCCGGGCc -3'
miRNA:   3'- cGCCuuGAGCG---ACUAGCUG-GGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 130009 0.68 0.900192
Target:  5'- cCGGAGCgUGCgGGUCGGCCUcgcgcgagGAGCGu -3'
miRNA:   3'- cGCCUUGaGCGaCUAGCUGGG--------CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 128947 0.68 0.891205
Target:  5'- gGUGGAGCcugcgccggacgagUCGCUcGAUCuggugcaGAUCCGAGCGc -3'
miRNA:   3'- -CGCCUUG--------------AGCGA-CUAG-------CUGGGCUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.