miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10776 5' -55.7 NC_002794.1 + 128208 0.87 0.117506
Target:  5'- aUGGGACUCGaCcGAUCGACCCGAGCGa -3'
miRNA:   3'- cGCCUUGAGC-GaCUAGCUGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 127812 0.69 0.866159
Target:  5'- cGCcGAGCgagCGCccgucGUCGGCCCGAGCc -3'
miRNA:   3'- -CGcCUUGa--GCGac---UAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 126318 0.69 0.866159
Target:  5'- aGCGGAgcgugacccGCUCGCUGAccgccgucuUCGuguCCCG-GCu -3'
miRNA:   3'- -CGCCU---------UGAGCGACU---------AGCu--GGGCuCGu -5'
10776 5' -55.7 NC_002794.1 + 123666 0.69 0.858728
Target:  5'- aGCuGGugUCGC---UCGGCCCGGGCu -3'
miRNA:   3'- -CGcCUugAGCGacuAGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 122750 0.68 0.893817
Target:  5'- cGCGGcaucCUCgaGCUGAUCGAgcgcuCCgCGAGCGg -3'
miRNA:   3'- -CGCCuu--GAG--CGACUAGCU-----GG-GCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 121928 0.68 0.893817
Target:  5'- cGCGGGggaagaggccgACgCGCUGAUCGagcGCCUgGAGCGc -3'
miRNA:   3'- -CGCCU-----------UGaGCGACUAGC---UGGG-CUCGU- -5'
10776 5' -55.7 NC_002794.1 + 119362 0.68 0.900192
Target:  5'- uGCGGAccucCUCGUucgcgUGGUCGAgCUGGGCc -3'
miRNA:   3'- -CGCCUu---GAGCG-----ACUAGCUgGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 118251 0.68 0.887222
Target:  5'- gGCGG-GCU-GgaGGUCGGCCgGGGCGg -3'
miRNA:   3'- -CGCCuUGAgCgaCUAGCUGGgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 117614 0.67 0.928689
Target:  5'- -aGGAACUCGCcGAgCGACa-GGGCGc -3'
miRNA:   3'- cgCCUUGAGCGaCUaGCUGggCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 117184 0.7 0.817911
Target:  5'- cCGGAuUUCGCgcaGAUCGgcgucggGCCCGGGCGg -3'
miRNA:   3'- cGCCUuGAGCGa--CUAGC-------UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 116076 0.66 0.959049
Target:  5'- cGCGGAGCgcucggCGCggcGGUCGucGCCgGGGUc -3'
miRNA:   3'- -CGCCUUGa-----GCGa--CUAGC--UGGgCUCGu -5'
10776 5' -55.7 NC_002794.1 + 115583 0.66 0.946957
Target:  5'- aCGGGACguagCgGCUGcgGUCGACCCGcucgcccGGCGc -3'
miRNA:   3'- cGCCUUGa---G-CGAC--UAGCUGGGC-------UCGU- -5'
10776 5' -55.7 NC_002794.1 + 113490 0.69 0.835282
Target:  5'- uGCaGGAGCUCGC-GcgCGGCCgaGAGCc -3'
miRNA:   3'- -CG-CCUUGAGCGaCuaGCUGGg-CUCGu -5'
10776 5' -55.7 NC_002794.1 + 111426 0.68 0.900192
Target:  5'- cGCGGAGC-CGCcaGAUCGGCaguCgGGGCGg -3'
miRNA:   3'- -CGCCUUGaGCGa-CUAGCUG---GgCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 110661 0.66 0.958691
Target:  5'- gGCGGcugcagacagugcAGCaCGCUGugGUCGucGCCCGAGUAg -3'
miRNA:   3'- -CGCC-------------UUGaGCGAC--UAGC--UGGGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 108443 0.73 0.668658
Target:  5'- gGCGGcACUCGCggcggCGGCCCGccGGCAc -3'
miRNA:   3'- -CGCCuUGAGCGacua-GCUGGGC--UCGU- -5'
10776 5' -55.7 NC_002794.1 + 104740 0.66 0.938489
Target:  5'- gGUGGAGCgcucgaucUCGUgguagcGGUCGGCCCGccGGCGc -3'
miRNA:   3'- -CGCCUUG--------AGCGa-----CUAGCUGGGC--UCGU- -5'
10776 5' -55.7 NC_002794.1 + 104624 0.66 0.959049
Target:  5'- uCGGccagcAGCUCGUUG-UCGcGCgCCGAGCAg -3'
miRNA:   3'- cGCC-----UUGAGCGACuAGC-UG-GGCUCGU- -5'
10776 5' -55.7 NC_002794.1 + 104438 0.67 0.933704
Target:  5'- cCGGAcgccGC-CGCgGG-CGGCCCGAGCc -3'
miRNA:   3'- cGCCU----UGaGCGaCUaGCUGGGCUCGu -5'
10776 5' -55.7 NC_002794.1 + 99875 0.69 0.843283
Target:  5'- uCGGccGACUCcaaggaGCUGAUCcACCCGGGCu -3'
miRNA:   3'- cGCC--UUGAG------CGACUAGcUGGGCUCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.