Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10776 | 5' | -55.7 | NC_002794.1 | + | 71185 | 0.66 | 0.955377 |
Target: 5'- gGCGGAACa-GgaGAUCGACC--AGCGc -3' miRNA: 3'- -CGCCUUGagCgaCUAGCUGGgcUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 131515 | 0.66 | 0.955377 |
Target: 5'- --cGAcCUCGCccgUGAUCGGCgCCGGGCc -3' miRNA: 3'- cgcCUuGAGCG---ACUAGCUG-GGCUCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 110661 | 0.66 | 0.958691 |
Target: 5'- gGCGGcugcagacagugcAGCaCGCUGugGUCGucGCCCGAGUAg -3' miRNA: 3'- -CGCC-------------UUGaGCGAC--UAGC--UGGGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 104624 | 0.66 | 0.959049 |
Target: 5'- uCGGccagcAGCUCGUUG-UCGcGCgCCGAGCAg -3' miRNA: 3'- cGCC-----UUGAGCGACuAGC-UG-GGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 116076 | 0.66 | 0.959049 |
Target: 5'- cGCGGAGCgcucggCGCggcGGUCGucGCCgGGGUc -3' miRNA: 3'- -CGCCUUGa-----GCGa--CUAGC--UGGgCUCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 104740 | 0.66 | 0.938489 |
Target: 5'- gGUGGAGCgcucgaucUCGUgguagcGGUCGGCCCGccGGCGc -3' miRNA: 3'- -CGCCUUG--------AGCGa-----CUAGCUGGGC--UCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 3303 | 0.66 | 0.938489 |
Target: 5'- -aGGAAUgaggaaCGCUGAgucaaaaCGACCCGAGg- -3' miRNA: 3'- cgCCUUGa-----GCGACUa------GCUGGGCUCgu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 92306 | 0.68 | 0.906345 |
Target: 5'- gGCGGGGCUgggCGCgGGcggCGgggGCCCGGGCGg -3' miRNA: 3'- -CGCCUUGA---GCGaCUa--GC---UGGGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 136516 | 0.67 | 0.912273 |
Target: 5'- aGCGGGGCgagguaGagaUGGUUGaagaGCCCGAGCAc -3' miRNA: 3'- -CGCCUUGag----Cg--ACUAGC----UGGGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 161575 | 0.67 | 0.917973 |
Target: 5'- gGCGGAGCcgucggucUCGuCUGAuUCGACUgCGGGUAa -3' miRNA: 3'- -CGCCUUG--------AGC-GACU-AGCUGG-GCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 74685 | 0.67 | 0.923446 |
Target: 5'- cGCGGAccgaACUCaucca-CGACCCGGGCAc -3' miRNA: 3'- -CGCCU----UGAGcgacuaGCUGGGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 117614 | 0.67 | 0.928689 |
Target: 5'- -aGGAACUCGCcGAgCGACa-GGGCGc -3' miRNA: 3'- cgCCUUGAGCGaCUaGCUGggCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 147224 | 0.67 | 0.923446 |
Target: 5'- cCGGGGCguuggCGC-GAUgGGCCCGAGa- -3' miRNA: 3'- cGCCUUGa----GCGaCUAgCUGGGCUCgu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 86098 | 0.67 | 0.928689 |
Target: 5'- cCGGGACggaUGCUc--CGGCCCGAGCc -3' miRNA: 3'- cGCCUUGa--GCGAcuaGCUGGGCUCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 86290 | 0.67 | 0.928689 |
Target: 5'- cCGGGACggaUGCUc--CGGCCCGAGCc -3' miRNA: 3'- cGCCUUGa--GCGAcuaGCUGGGCUCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 104438 | 0.67 | 0.933704 |
Target: 5'- cCGGAcgccGC-CGCgGG-CGGCCCGAGCc -3' miRNA: 3'- cGCCU----UGaGCGaCUaGCUGGGCUCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 14472 | 0.67 | 0.933704 |
Target: 5'- aGCGGcgcgccgcGCUCGCUGuucgcggcggCGGCCCGcGCu -3' miRNA: 3'- -CGCCu-------UGAGCGACua--------GCUGGGCuCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 86650 | 0.67 | 0.928689 |
Target: 5'- cCGGGACggaUGCUc--CGGCCCGAGCc -3' miRNA: 3'- cGCCUUGa--GCGAcuaGCUGGGCUCGu -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 93317 | 0.66 | 0.938021 |
Target: 5'- gGCGacuaccuGAGCaCGCUGcaCGGCCUGAGCAc -3' miRNA: 3'- -CGC-------CUUGaGCGACuaGCUGGGCUCGU- -5' |
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10776 | 5' | -55.7 | NC_002794.1 | + | 150622 | 0.67 | 0.935645 |
Target: 5'- uGCgGGAGCUCGUgagccaGuaucccggcacgcgcGUCGACCUGGGCu -3' miRNA: 3'- -CG-CCUUGAGCGa-----C---------------UAGCUGGGCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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