miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10777 3' -55.2 NC_002794.1 + 144947 0.66 0.967318
Target:  5'- uGCUGGAccaccugugucuccuCGGCGCCucgacggUGUCGCgACCGg-- -3'
miRNA:   3'- -CGACUU---------------GCUGCGG-------ACAGCG-UGGCagu -5'
10777 3' -55.2 NC_002794.1 + 64993 0.66 0.966392
Target:  5'- aGCUGcacuGGCGGCaguggaaccucaGCCUGUCGCuagacuCCGUg- -3'
miRNA:   3'- -CGAC----UUGCUG------------CGGACAGCGu-----GGCAgu -5'
10777 3' -55.2 NC_002794.1 + 47967 0.66 0.966392
Target:  5'- gGCUGGGCGAcCGCCg--CGCGCUc--- -3'
miRNA:   3'- -CGACUUGCU-GCGGacaGCGUGGcagu -5'
10777 3' -55.2 NC_002794.1 + 110352 0.66 0.966392
Target:  5'- cGCcGuGGCGACGCCUcGUCGU--CGUCGg -3'
miRNA:   3'- -CGaC-UUGCUGCGGA-CAGCGugGCAGU- -5'
10777 3' -55.2 NC_002794.1 + 33776 0.66 0.966392
Target:  5'- uGCUGAagcACGACaGCCUGUgcCGcCACCa--- -3'
miRNA:   3'- -CGACU---UGCUG-CGGACA--GC-GUGGcagu -5'
10777 3' -55.2 NC_002794.1 + 187431 0.66 0.966392
Target:  5'- uGCUGGA--AgGCCaGcCGCGCCGUCu -3'
miRNA:   3'- -CGACUUgcUgCGGaCaGCGUGGCAGu -5'
10777 3' -55.2 NC_002794.1 + 95590 0.66 0.966392
Target:  5'- gGCUcGAucuacGCGGCGCCggagCGCAUCGUgGa -3'
miRNA:   3'- -CGA-CU-----UGCUGCGGaca-GCGUGGCAgU- -5'
10777 3' -55.2 NC_002794.1 + 99799 0.66 0.966392
Target:  5'- --cGAGCGcGCGCCgcgGgcgccgGCGCCGUCGg -3'
miRNA:   3'- cgaCUUGC-UGCGGa--Cag----CGUGGCAGU- -5'
10777 3' -55.2 NC_002794.1 + 38685 0.66 0.966392
Target:  5'- cGC-GGACGGgGUCaccGcCGCGCCGUCGa -3'
miRNA:   3'- -CGaCUUGCUgCGGa--CaGCGUGGCAGU- -5'
10777 3' -55.2 NC_002794.1 + 125330 0.66 0.966392
Target:  5'- aGCcgGAGCG-CGCCacggCGCACCGgCAg -3'
miRNA:   3'- -CGa-CUUGCuGCGGaca-GCGUGGCaGU- -5'
10777 3' -55.2 NC_002794.1 + 106256 0.66 0.966392
Target:  5'- cGCgaaccGGCGAgCGCCgcgcGUCGCGCCGccUCGg -3'
miRNA:   3'- -CGac---UUGCU-GCGGa---CAGCGUGGC--AGU- -5'
10777 3' -55.2 NC_002794.1 + 61543 0.66 0.966392
Target:  5'- cGCgaaGACGACGCCgc-CGCggcggcggccGCCGUCGa -3'
miRNA:   3'- -CGac-UUGCUGCGGacaGCG----------UGGCAGU- -5'
10777 3' -55.2 NC_002794.1 + 19328 0.66 0.963172
Target:  5'- cGCUG-GCGAC-CCg--CGCGCCGgUCAc -3'
miRNA:   3'- -CGACuUGCUGcGGacaGCGUGGC-AGU- -5'
10777 3' -55.2 NC_002794.1 + 81254 0.66 0.963172
Target:  5'- --cGGACGACGCgCUGgccuUCGC-CCGcCAg -3'
miRNA:   3'- cgaCUUGCUGCG-GAC----AGCGuGGCaGU- -5'
10777 3' -55.2 NC_002794.1 + 127799 0.66 0.963172
Target:  5'- gGCUccGAGuCGACGCCgagcgagCGC-CCGUCGu -3'
miRNA:   3'- -CGA--CUU-GCUGCGGaca----GCGuGGCAGU- -5'
10777 3' -55.2 NC_002794.1 + 152838 0.66 0.963172
Target:  5'- gGCgucAGCGACGCCUa-CGCGCUGUa- -3'
miRNA:   3'- -CGac-UUGCUGCGGAcaGCGUGGCAgu -5'
10777 3' -55.2 NC_002794.1 + 108195 0.66 0.963172
Target:  5'- uGC-GAGCGGCGCUgcgccGcCGCGCCGg-- -3'
miRNA:   3'- -CGaCUUGCUGCGGa----CaGCGUGGCagu -5'
10777 3' -55.2 NC_002794.1 + 80209 0.66 0.959743
Target:  5'- gGCggucGACGACGCCUcGcCGCacaccggcGCCGUCu -3'
miRNA:   3'- -CGac--UUGCUGCGGA-CaGCG--------UGGCAGu -5'
10777 3' -55.2 NC_002794.1 + 97675 0.66 0.959743
Target:  5'- uGCUGGAgcgguuCGGCGCCgucaaCGCGcCCGUCc -3'
miRNA:   3'- -CGACUU------GCUGCGGaca--GCGU-GGCAGu -5'
10777 3' -55.2 NC_002794.1 + 146968 0.66 0.956101
Target:  5'- -aUGGAC--CGCCUGUCGCGagGUCGg -3'
miRNA:   3'- cgACUUGcuGCGGACAGCGUggCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.