miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10777 5' -60 NC_002794.1 + 141154 0.66 0.829931
Target:  5'- -cCGGCGGaucCCGCGACGAcGUcg-UCGCg -3'
miRNA:   3'- ccGCCGCC---GGCGCUGCU-CGucaAGUG- -5'
10777 5' -60 NC_002794.1 + 110446 0.66 0.829931
Target:  5'- cGGUGGCGGagGcCGGCGAGcCGGcUCGu -3'
miRNA:   3'- -CCGCCGCCggC-GCUGCUC-GUCaAGUg -5'
10777 5' -60 NC_002794.1 + 80410 0.66 0.829931
Target:  5'- cGCGGCccaGGUgGCGcCGGGCGGggcCGCc -3'
miRNA:   3'- cCGCCG---CCGgCGCuGCUCGUCaa-GUG- -5'
10777 5' -60 NC_002794.1 + 104490 0.66 0.829931
Target:  5'- cGGCcacGGCGGCCGgGuCGGGCGaga-ACg -3'
miRNA:   3'- -CCG---CCGCCGGCgCuGCUCGUcaagUG- -5'
10777 5' -60 NC_002794.1 + 100827 0.66 0.829931
Target:  5'- cGGCGGgGGCCGgcaGcCGGGCuuccgCACc -3'
miRNA:   3'- -CCGCCgCCGGCg--CuGCUCGucaa-GUG- -5'
10777 5' -60 NC_002794.1 + 119513 0.66 0.829931
Target:  5'- cGGCGGCgcggagccGGCCGCGGaccccuCGuccGCGGccgUCGCc -3'
miRNA:   3'- -CCGCCG--------CCGGCGCU------GCu--CGUCa--AGUG- -5'
10777 5' -60 NC_002794.1 + 50664 0.66 0.829931
Target:  5'- -aUGGCGGCCGCGGCGcuCGc--CGCg -3'
miRNA:   3'- ccGCCGCCGGCGCUGCucGUcaaGUG- -5'
10777 5' -60 NC_002794.1 + 150731 0.66 0.829129
Target:  5'- cGGCGGCuGaCCGCGuucccguGCGuGCAGcgCAa -3'
miRNA:   3'- -CCGCCGcC-GGCGC-------UGCuCGUCaaGUg -5'
10777 5' -60 NC_002794.1 + 67430 0.66 0.828327
Target:  5'- cGGCGGCGuGUCGCGccgcuuCGGGCucccgcccgCACu -3'
miRNA:   3'- -CCGCCGC-CGGCGCu-----GCUCGucaa-----GUG- -5'
10777 5' -60 NC_002794.1 + 67210 0.66 0.821847
Target:  5'- gGGCGGUGcGCUcgGCGcCGGGCGGcuaacCGCg -3'
miRNA:   3'- -CCGCCGC-CGG--CGCuGCUCGUCaa---GUG- -5'
10777 5' -60 NC_002794.1 + 74103 0.66 0.821847
Target:  5'- aGCuGCGGCUGCucacccuCGAGCAGgcCGCc -3'
miRNA:   3'- cCGcCGCCGGCGcu-----GCUCGUCaaGUG- -5'
10777 5' -60 NC_002794.1 + 143829 0.66 0.821847
Target:  5'- uGGCGaGCGGCCGgucCGACGccuccGGcCAGgcgaUCGCc -3'
miRNA:   3'- -CCGC-CGCCGGC---GCUGC-----UC-GUCa---AGUG- -5'
10777 5' -60 NC_002794.1 + 119786 0.66 0.821847
Target:  5'- aGGCGGCuccGGuCCGcCGACuuGAGCG--UCGCg -3'
miRNA:   3'- -CCGCCG---CC-GGC-GCUG--CUCGUcaAGUG- -5'
10777 5' -60 NC_002794.1 + 103818 0.66 0.821847
Target:  5'- cGGCGGC-GCCGaCGugGAGU----CGCa -3'
miRNA:   3'- -CCGCCGcCGGC-GCugCUCGucaaGUG- -5'
10777 5' -60 NC_002794.1 + 182541 0.66 0.821847
Target:  5'- cGGCaGCGacugcGCCGCGGCcGGCAccgUCACc -3'
miRNA:   3'- -CCGcCGC-----CGGCGCUGcUCGUca-AGUG- -5'
10777 5' -60 NC_002794.1 + 122183 0.66 0.821847
Target:  5'- cGGCGcGCGcGUgugcgaCGCGGCGAaGCGGUgccggCGCc -3'
miRNA:   3'- -CCGC-CGC-CG------GCGCUGCU-CGUCAa----GUG- -5'
10777 5' -60 NC_002794.1 + 118680 0.66 0.821847
Target:  5'- cGCGGCcGCCGcCGGCG-GCAGcgCcCa -3'
miRNA:   3'- cCGCCGcCGGC-GCUGCuCGUCaaGuG- -5'
10777 5' -60 NC_002794.1 + 192437 0.66 0.821847
Target:  5'- cGGcCGGCGcGUCGCG-CGccucGCAGU-CGCg -3'
miRNA:   3'- -CC-GCCGC-CGGCGCuGCu---CGUCAaGUG- -5'
10777 5' -60 NC_002794.1 + 92009 0.66 0.813606
Target:  5'- cGGCGGCaGCgCGCucuACGAGCaccuGGUgCACu -3'
miRNA:   3'- -CCGCCGcCG-GCGc--UGCUCG----UCAaGUG- -5'
10777 5' -60 NC_002794.1 + 67019 0.66 0.813606
Target:  5'- cGGCGGCGGCgGCcGGCucccGCcGcgUCGCg -3'
miRNA:   3'- -CCGCCGCCGgCG-CUGcu--CGuCa-AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.