miRNA display CGI


Results 1 - 20 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10777 5' -60 NC_002794.1 + 91883 1.12 0.001129
Target:  5'- cGGCGGCGGCCGCGACGAGCAGUUCACg -3'
miRNA:   3'- -CCGCCGCCGGCGCUGCUCGUCAAGUG- -5'
10777 5' -60 NC_002794.1 + 185475 0.9 0.033284
Target:  5'- gGGCGGCGGCCGCGGCGAGgGGacCGCc -3'
miRNA:   3'- -CCGCCGCCGGCGCUGCUCgUCaaGUG- -5'
10777 5' -60 NC_002794.1 + 179989 0.85 0.076141
Target:  5'- aGGCGGUGGCCGCGACG-GCGGgcccggcCACg -3'
miRNA:   3'- -CCGCCGCCGGCGCUGCuCGUCaa-----GUG- -5'
10777 5' -60 NC_002794.1 + 95765 0.84 0.088695
Target:  5'- gGGCGGCGGCCGCGACG-GCGGc---- -3'
miRNA:   3'- -CCGCCGCCGGCGCUGCuCGUCaagug -5'
10777 5' -60 NC_002794.1 + 21660 0.84 0.095689
Target:  5'- cGGCGGCGGUgGCGGCG-GCGGUauUCGCc -3'
miRNA:   3'- -CCGCCGCCGgCGCUGCuCGUCA--AGUG- -5'
10777 5' -60 NC_002794.1 + 49405 0.83 0.100638
Target:  5'- cGGCcacGGCGGCCGCGGCGgcGGCGGccgUCACg -3'
miRNA:   3'- -CCG---CCGCCGGCGCUGC--UCGUCa--AGUG- -5'
10777 5' -60 NC_002794.1 + 95842 0.82 0.129197
Target:  5'- cGGCGGCGGCCggggagGCGGCGGGCGGgccguUUCAg -3'
miRNA:   3'- -CCGCCGCCGG------CGCUGCUCGUC-----AAGUg -5'
10777 5' -60 NC_002794.1 + 154373 0.81 0.135745
Target:  5'- aGGCcGCGGCgGCGGCGGGCAcgcccGUUCGCg -3'
miRNA:   3'- -CCGcCGCCGgCGCUGCUCGU-----CAAGUG- -5'
10777 5' -60 NC_002794.1 + 55280 0.81 0.135745
Target:  5'- cGGCGGUGGCgGCGACGAgggcggcgGCGGcgUCGCg -3'
miRNA:   3'- -CCGCCGCCGgCGCUGCU--------CGUCa-AGUG- -5'
10777 5' -60 NC_002794.1 + 32875 0.81 0.142596
Target:  5'- gGGCGGCGGCgGCGGCG-GCGGcaUCAUg -3'
miRNA:   3'- -CCGCCGCCGgCGCUGCuCGUCa-AGUG- -5'
10777 5' -60 NC_002794.1 + 49019 0.8 0.165086
Target:  5'- cGCGGCGGCCGCGGCGucguccggcGCGGUcgUCAg -3'
miRNA:   3'- cCGCCGCCGGCGCUGCu--------CGUCA--AGUg -5'
10777 5' -60 NC_002794.1 + 37892 0.79 0.181803
Target:  5'- gGGCGGUGGCgGCGGC-AGCGGcUCGCc -3'
miRNA:   3'- -CCGCCGCCGgCGCUGcUCGUCaAGUG- -5'
10777 5' -60 NC_002794.1 + 72747 0.79 0.195307
Target:  5'- cGCGGCGGCCGcCGAcCGAGCGGaUCu- -3'
miRNA:   3'- cCGCCGCCGGC-GCU-GCUCGUCaAGug -5'
10777 5' -60 NC_002794.1 + 116134 0.79 0.195307
Target:  5'- cGGCGGCGGCgGCGGCGGcCAGggccugCACc -3'
miRNA:   3'- -CCGCCGCCGgCGCUGCUcGUCaa----GUG- -5'
10777 5' -60 NC_002794.1 + 142211 0.78 0.2
Target:  5'- cGGCGGCGGCaGCGGCGGuGCGGggaGCg -3'
miRNA:   3'- -CCGCCGCCGgCGCUGCU-CGUCaagUG- -5'
10777 5' -60 NC_002794.1 + 79435 0.78 0.219762
Target:  5'- cGGCGGCGGCgGCGGCGAcCGGcgCGg -3'
miRNA:   3'- -CCGCCGCCGgCGCUGCUcGUCaaGUg -5'
10777 5' -60 NC_002794.1 + 137607 0.77 0.230255
Target:  5'- cGcCGGCGGUCGCGGCG-GCGGUgccCACg -3'
miRNA:   3'- cC-GCCGCCGGCGCUGCuCGUCAa--GUG- -5'
10777 5' -60 NC_002794.1 + 58069 0.77 0.241167
Target:  5'- cGGCGGCGGCgG-GACGGGCGGcccggCGCc -3'
miRNA:   3'- -CCGCCGCCGgCgCUGCUCGUCaa---GUG- -5'
10777 5' -60 NC_002794.1 + 65929 0.77 0.241167
Target:  5'- cGGCGGCGGUgGCGuCGgcGGCGGUaucgUCGCg -3'
miRNA:   3'- -CCGCCGCCGgCGCuGC--UCGUCA----AGUG- -5'
10777 5' -60 NC_002794.1 + 70668 0.77 0.246784
Target:  5'- cGCGGCGGCCGCcGCG-GCGGUgacguccugUCGCc -3'
miRNA:   3'- cCGCCGCCGGCGcUGCuCGUCA---------AGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.