miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10778 3' -53.2 NC_002794.1 + 129194 0.66 0.987463
Target:  5'- uCCgggUCgaCgacCGaGCGGCCGACGGcGGUGg -3'
miRNA:   3'- -GGa--AGaaGa--GC-CGCCGGUUGUU-CCAC- -5'
10778 3' -53.2 NC_002794.1 + 26652 0.66 0.987463
Target:  5'- --------aCGGCGGCCGgcucgucgGCGGGGUGg -3'
miRNA:   3'- ggaagaagaGCCGCCGGU--------UGUUCCAC- -5'
10778 3' -53.2 NC_002794.1 + 95290 0.66 0.986521
Target:  5'- uCC-UCUUCggCGGCGGUcucccaugccuauauCAGCGAGGc- -3'
miRNA:   3'- -GGaAGAAGa-GCCGCCG---------------GUUGUUCCac -5'
10778 3' -53.2 NC_002794.1 + 156388 0.66 0.984112
Target:  5'- gUCUUCUUCUaGaGCGGCCGGCGccgcGGc- -3'
miRNA:   3'- -GGAAGAAGAgC-CGCCGGUUGUu---CCac -5'
10778 3' -53.2 NC_002794.1 + 70660 0.66 0.984112
Target:  5'- gCC-UCgugCgCGGCGGCCGccGCGGcGGUGa -3'
miRNA:   3'- -GGaAGaa-GaGCCGCCGGU--UGUU-CCAC- -5'
10778 3' -53.2 NC_002794.1 + 116855 0.66 0.983742
Target:  5'- --aUCUUCaugCGGCGGCCGugucgcgcucguCAGGGg- -3'
miRNA:   3'- ggaAGAAGa--GCCGCCGGUu-----------GUUCCac -5'
10778 3' -53.2 NC_002794.1 + 180749 0.67 0.9728
Target:  5'- uCCggCUcCUCGGCGGCUucggcGGCAAcuguccgggcGGUGg -3'
miRNA:   3'- -GGaaGAaGAGCCGCCGG-----UUGUU----------CCAC- -5'
10778 3' -53.2 NC_002794.1 + 151302 0.67 0.9728
Target:  5'- gCUUCgucgUCaaGGUGGCCAACAccauccgcGGGUu -3'
miRNA:   3'- gGAAGa---AGagCCGCCGGUUGU--------UCCAc -5'
10778 3' -53.2 NC_002794.1 + 118634 0.68 0.963704
Target:  5'- gCUgCUgcgccagCUCGGCGGCCAGCucguccGUGg -3'
miRNA:   3'- gGAaGAa------GAGCCGCCGGUUGuuc---CAC- -5'
10778 3' -53.2 NC_002794.1 + 108824 0.68 0.963704
Target:  5'- gCUUCggCgUCGGCGGCUuccgAGCGaaccGGGUGu -3'
miRNA:   3'- gGAAGaaG-AGCCGCCGG----UUGU----UCCAC- -5'
10778 3' -53.2 NC_002794.1 + 133911 0.68 0.963369
Target:  5'- -aUUCggUCUacgagaCGGCGGCCGcgcccguccaguuGCGGGGUGa -3'
miRNA:   3'- ggAAGa-AGA------GCCGCCGGU-------------UGUUCCAC- -5'
10778 3' -53.2 NC_002794.1 + 144063 0.68 0.944181
Target:  5'- ---aCUUCUCGcccgacGCGuCCGACGAGGUGg -3'
miRNA:   3'- ggaaGAAGAGC------CGCcGGUUGUUCCAC- -5'
10778 3' -53.2 NC_002794.1 + 138478 0.69 0.918822
Target:  5'- aCCgUCUcgUCGGCGGucCCGGCGGGGUu -3'
miRNA:   3'- -GGaAGAagAGCCGCC--GGUUGUUCCAc -5'
10778 3' -53.2 NC_002794.1 + 106972 0.7 0.907011
Target:  5'- gCC-UCgcg-CGGCGGCCGGCAcggcGGUGg -3'
miRNA:   3'- -GGaAGaagaGCCGCCGGUUGUu---CCAC- -5'
10778 3' -53.2 NC_002794.1 + 138178 0.71 0.86605
Target:  5'- --cUCUUgacCUCGGCGGCCAGCc-GGUc -3'
miRNA:   3'- ggaAGAA---GAGCCGCCGGUUGuuCCAc -5'
10778 3' -53.2 NC_002794.1 + 119903 0.71 0.858459
Target:  5'- -----aUCUUGGCGGCCGACGccGGGg- -3'
miRNA:   3'- ggaagaAGAGCCGCCGGUUGU--UCCac -5'
10778 3' -53.2 NC_002794.1 + 142115 0.72 0.834484
Target:  5'- uCCUUCUcugCgaccCGGCGGCCGACcgccGGGUc -3'
miRNA:   3'- -GGAAGAa--Ga---GCCGCCGGUUGu---UCCAc -5'
10778 3' -53.2 NC_002794.1 + 91022 0.74 0.74387
Target:  5'- aCUUCaccgagcUCUgGGCGGCCcuCGGGGUGg -3'
miRNA:   3'- gGAAGa------AGAgCCGCCGGuuGUUCCAC- -5'
10778 3' -53.2 NC_002794.1 + 136332 0.74 0.724286
Target:  5'- --cUCUUCUCGGUGGCgGGCcAGcGUGg -3'
miRNA:   3'- ggaAGAAGAGCCGCCGgUUGuUC-CAC- -5'
10778 3' -53.2 NC_002794.1 + 16150 0.77 0.54208
Target:  5'- gCUUCUUCUCGGa-GCCGGCAugaacggcGGGUGg -3'
miRNA:   3'- gGAAGAAGAGCCgcCGGUUGU--------UCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.