Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10778 | 3' | -53.2 | NC_002794.1 | + | 129194 | 0.66 | 0.987463 |
Target: 5'- uCCgggUCgaCgacCGaGCGGCCGACGGcGGUGg -3' miRNA: 3'- -GGa--AGaaGa--GC-CGCCGGUUGUU-CCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 106972 | 0.7 | 0.907011 |
Target: 5'- gCC-UCgcg-CGGCGGCCGGCAcggcGGUGg -3' miRNA: 3'- -GGaAGaagaGCCGCCGGUUGUu---CCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 138478 | 0.69 | 0.918822 |
Target: 5'- aCCgUCUcgUCGGCGGucCCGGCGGGGUu -3' miRNA: 3'- -GGaAGAagAGCCGCC--GGUUGUUCCAc -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 144063 | 0.68 | 0.944181 |
Target: 5'- ---aCUUCUCGcccgacGCGuCCGACGAGGUGg -3' miRNA: 3'- ggaaGAAGAGC------CGCcGGUUGUUCCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 119903 | 0.71 | 0.858459 |
Target: 5'- -----aUCUUGGCGGCCGACGccGGGg- -3' miRNA: 3'- ggaagaAGAGCCGCCGGUUGU--UCCac -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 142115 | 0.72 | 0.834484 |
Target: 5'- uCCUUCUcugCgaccCGGCGGCCGACcgccGGGUc -3' miRNA: 3'- -GGAAGAa--Ga---GCCGCCGGUUGu---UCCAc -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 91022 | 0.74 | 0.74387 |
Target: 5'- aCUUCaccgagcUCUgGGCGGCCcuCGGGGUGg -3' miRNA: 3'- gGAAGa------AGAgCCGCCGGuuGUUCCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 136332 | 0.74 | 0.724286 |
Target: 5'- --cUCUUCUCGGUGGCgGGCcAGcGUGg -3' miRNA: 3'- ggaAGAAGAGCCGCCGgUUGuUC-CAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 16150 | 0.77 | 0.54208 |
Target: 5'- gCUUCUUCUCGGa-GCCGGCAugaacggcGGGUGg -3' miRNA: 3'- gGAAGAAGAGCCgcCGGUUGU--------UCCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 138178 | 0.71 | 0.86605 |
Target: 5'- --cUCUUgacCUCGGCGGCCAGCc-GGUc -3' miRNA: 3'- ggaAGAA---GAGCCGCCGGUUGuuCCAc -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 118634 | 0.68 | 0.963704 |
Target: 5'- gCUgCUgcgccagCUCGGCGGCCAGCucguccGUGg -3' miRNA: 3'- gGAaGAa------GAGCCGCCGGUUGuuc---CAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 108824 | 0.68 | 0.963704 |
Target: 5'- gCUUCggCgUCGGCGGCUuccgAGCGaaccGGGUGu -3' miRNA: 3'- gGAAGaaG-AGCCGCCGG----UUGU----UCCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 26652 | 0.66 | 0.987463 |
Target: 5'- --------aCGGCGGCCGgcucgucgGCGGGGUGg -3' miRNA: 3'- ggaagaagaGCCGCCGGU--------UGUUCCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 95290 | 0.66 | 0.986521 |
Target: 5'- uCC-UCUUCggCGGCGGUcucccaugccuauauCAGCGAGGc- -3' miRNA: 3'- -GGaAGAAGa-GCCGCCG---------------GUUGUUCCac -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 156388 | 0.66 | 0.984112 |
Target: 5'- gUCUUCUUCUaGaGCGGCCGGCGccgcGGc- -3' miRNA: 3'- -GGAAGAAGAgC-CGCCGGUUGUu---CCac -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 70660 | 0.66 | 0.984112 |
Target: 5'- gCC-UCgugCgCGGCGGCCGccGCGGcGGUGa -3' miRNA: 3'- -GGaAGaa-GaGCCGCCGGU--UGUU-CCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 116855 | 0.66 | 0.983742 |
Target: 5'- --aUCUUCaugCGGCGGCCGugucgcgcucguCAGGGg- -3' miRNA: 3'- ggaAGAAGa--GCCGCCGGUu-----------GUUCCac -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 180749 | 0.67 | 0.9728 |
Target: 5'- uCCggCUcCUCGGCGGCUucggcGGCAAcuguccgggcGGUGg -3' miRNA: 3'- -GGaaGAaGAGCCGCCGG-----UUGUU----------CCAC- -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 151302 | 0.67 | 0.9728 |
Target: 5'- gCUUCgucgUCaaGGUGGCCAACAccauccgcGGGUu -3' miRNA: 3'- gGAAGa---AGagCCGCCGGUUGU--------UCCAc -5' |
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10778 | 3' | -53.2 | NC_002794.1 | + | 133911 | 0.68 | 0.963369 |
Target: 5'- -aUUCggUCUacgagaCGGCGGCCGcgcccguccaguuGCGGGGUGa -3' miRNA: 3'- ggAAGa-AGA------GCCGCCGGU-------------UGUUCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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