miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10778 5' -61.5 NC_002794.1 + 126296 0.66 0.72741
Target:  5'- uGCGCCGCGCGccuGGCGGuGCaGCgGAGc -3'
miRNA:   3'- cCGUGGCGCGUc--CUGCC-CGaCGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 68345 0.66 0.717904
Target:  5'- gGGUucauCCGCcaAGaGACGGGCcUGCUGAu -3'
miRNA:   3'- -CCGu---GGCGcgUC-CUGCCCG-ACGACUu -5'
10778 5' -61.5 NC_002794.1 + 139998 0.66 0.717904
Target:  5'- cGGgACgGUGCGGGugGaGGCcGCgGAGg -3'
miRNA:   3'- -CCgUGgCGCGUCCugC-CCGaCGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 127079 0.66 0.70833
Target:  5'- aGCGCC-CGCcGGACcGGCUGgaGAGc -3'
miRNA:   3'- cCGUGGcGCGuCCUGcCCGACgaCUU- -5'
10778 5' -61.5 NC_002794.1 + 104490 0.66 0.70833
Target:  5'- cGGcCACgGCGgcCGGGuCGGGCgagaacggGCUGAGg -3'
miRNA:   3'- -CC-GUGgCGC--GUCCuGCCCGa-------CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 34838 0.66 0.707369
Target:  5'- cGGCGCCGgaGCGGGcgucggaGCGGGCgccGCgGGc -3'
miRNA:   3'- -CCGUGGCg-CGUCC-------UGCCCGa--CGaCUu -5'
10778 5' -61.5 NC_002794.1 + 128161 0.66 0.698696
Target:  5'- cGGCGgcUCGCGCcgcGGACGGGUcGgUGAc -3'
miRNA:   3'- -CCGU--GGCGCGu--CCUGCCCGaCgACUu -5'
10778 5' -61.5 NC_002794.1 + 123539 0.66 0.689011
Target:  5'- gGGCACaCGCGCuacagccGCGGGCUGUUc-- -3'
miRNA:   3'- -CCGUG-GCGCGucc----UGCCCGACGAcuu -5'
10778 5' -61.5 NC_002794.1 + 122577 0.66 0.689011
Target:  5'- cGGCuGCUGgGgaugaugaAGGACGGGCUggcGCUGAGc -3'
miRNA:   3'- -CCG-UGGCgCg-------UCCUGCCCGA---CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 106987 0.66 0.689011
Target:  5'- cGGCACgGCGguGG-CGGcGCUGgCcGAc -3'
miRNA:   3'- -CCGUGgCGCguCCuGCC-CGAC-GaCUu -5'
10778 5' -61.5 NC_002794.1 + 179632 0.66 0.68804
Target:  5'- gGGCGCUGCGaCGGaaaggagaagucaGGCGGGCUcGCcGGAc -3'
miRNA:   3'- -CCGUGGCGC-GUC-------------CUGCCCGA-CGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 104278 0.66 0.679282
Target:  5'- cGGCACCGUGCcgaacAGGAucuCGGGCcgggUGCa--- -3'
miRNA:   3'- -CCGUGGCGCG-----UCCU---GCCCG----ACGacuu -5'
10778 5' -61.5 NC_002794.1 + 106414 0.66 0.679282
Target:  5'- cGGCGgCGC-CGGGGCucauGGcGCUGUUGGAg -3'
miRNA:   3'- -CCGUgGCGcGUCCUG----CC-CGACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 114349 0.66 0.679282
Target:  5'- cGGCucguccGCCGC-CAGGGCcGGCUGCaGGg -3'
miRNA:   3'- -CCG------UGGCGcGUCCUGcCCGACGaCUu -5'
10778 5' -61.5 NC_002794.1 + 92960 0.66 0.679282
Target:  5'- cGGCccaucCCGCGCGGcGGCaagGGGCUGCc--- -3'
miRNA:   3'- -CCGu----GGCGCGUC-CUG---CCCGACGacuu -5'
10778 5' -61.5 NC_002794.1 + 66856 0.66 0.679282
Target:  5'- cGGCGCgGCG-AGGcCGcGGCgugcgGCUGAGc -3'
miRNA:   3'- -CCGUGgCGCgUCCuGC-CCGa----CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 126704 0.66 0.679282
Target:  5'- gGGCGCCGCGgacuCGGGGCGaGGggGgUGGGu -3'
miRNA:   3'- -CCGUGGCGC----GUCCUGC-CCgaCgACUU- -5'
10778 5' -61.5 NC_002794.1 + 192961 0.66 0.669518
Target:  5'- aGGCcgacgaGCCGUGCAGGACcaGGGC-GCg--- -3'
miRNA:   3'- -CCG------UGGCGCGUCCUG--CCCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 31582 0.67 0.659726
Target:  5'- cGGCGCUGUGCAGuaagcaauacACGGGgaGCUcGAAc -3'
miRNA:   3'- -CCGUGGCGCGUCc---------UGCCCgaCGA-CUU- -5'
10778 5' -61.5 NC_002794.1 + 49251 0.67 0.649913
Target:  5'- gGGCGcCCGCGCAcccacGACGGGC-GCUc-- -3'
miRNA:   3'- -CCGU-GGCGCGUc----CUGCCCGaCGAcuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.