miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10778 5' -61.5 NC_002794.1 + 91764 1.08 0.001246
Target:  5'- cGGCACCGCGCAGGACGGGCUGCUGAAg -3'
miRNA:   3'- -CCGUGGCGCGUCCUGCCCGACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 112350 0.81 0.092684
Target:  5'- cGGCGCCgGCgGCGGGGCGGggaGCUGCUGGAa -3'
miRNA:   3'- -CCGUGG-CG-CGUCCUGCC---CGACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 91124 0.78 0.160637
Target:  5'- uGGUGCCGUGCGuggaggaggcgcGGACGGuGCUGCUGGg -3'
miRNA:   3'- -CCGUGGCGCGU------------CCUGCC-CGACGACUu -5'
10778 5' -61.5 NC_002794.1 + 111755 0.75 0.241059
Target:  5'- uGGCGCCGCGCggcgccgucGGGGCGGGCUcGUUc-- -3'
miRNA:   3'- -CCGUGGCGCG---------UCCUGCCCGA-CGAcuu -5'
10778 5' -61.5 NC_002794.1 + 102517 0.73 0.302563
Target:  5'- uGGCGCgCGCGCGGGAcgaccucuucuCGGGCcGCgUGGAg -3'
miRNA:   3'- -CCGUG-GCGCGUCCU-----------GCCCGaCG-ACUU- -5'
10778 5' -61.5 NC_002794.1 + 56899 0.73 0.330351
Target:  5'- aGGUGCCGCGCGuGGccACGGGCgccggGCUGc- -3'
miRNA:   3'- -CCGUGGCGCGU-CC--UGCCCGa----CGACuu -5'
10778 5' -61.5 NC_002794.1 + 41862 0.73 0.330351
Target:  5'- aGGcCGCCGgGCAGGGcCGGGC-GCUGc- -3'
miRNA:   3'- -CC-GUGGCgCGUCCU-GCCCGaCGACuu -5'
10778 5' -61.5 NC_002794.1 + 184033 0.72 0.38338
Target:  5'- cGGCACCGCGCGcagcgcgcGGucGCGGGCcGCggcGAAg -3'
miRNA:   3'- -CCGUGGCGCGU--------CC--UGCCCGaCGa--CUU- -5'
10778 5' -61.5 NC_002794.1 + 120258 0.71 0.416118
Target:  5'- cGCGCuucuuCGUGCAGGA-GGGCuUGCUGGAg -3'
miRNA:   3'- cCGUG-----GCGCGUCCUgCCCG-ACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 87078 0.7 0.441765
Target:  5'- aGCACgGUGCAGGcCGGGCgGgUGGGg -3'
miRNA:   3'- cCGUGgCGCGUCCuGCCCGaCgACUU- -5'
10778 5' -61.5 NC_002794.1 + 104318 0.7 0.459351
Target:  5'- aGGUugGCCGCGCAGuACGGGUcGCaGAAg -3'
miRNA:   3'- -CCG--UGGCGCGUCcUGCCCGaCGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 33640 0.7 0.468283
Target:  5'- cGGCACCGcCGC---ACGGGCgcGCUGAGc -3'
miRNA:   3'- -CCGUGGC-GCGuccUGCCCGa-CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 130211 0.7 0.468283
Target:  5'- --gGCCGUGCAGGcgaccgACGGGCUcCUGAGa -3'
miRNA:   3'- ccgUGGCGCGUCC------UGCCCGAcGACUU- -5'
10778 5' -61.5 NC_002794.1 + 58722 0.7 0.485494
Target:  5'- uGCACCGCGUcucgcgccucagcGGGcucaACGGGCaGCUGGc -3'
miRNA:   3'- cCGUGGCGCG-------------UCC----UGCCCGaCGACUu -5'
10778 5' -61.5 NC_002794.1 + 58069 0.69 0.495595
Target:  5'- cGGCGgCG-GCGGGACGGGCgGCc--- -3'
miRNA:   3'- -CCGUgGCgCGUCCUGCCCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 14611 0.69 0.495595
Target:  5'- gGGCACCGCGaCGGGGCcggagacgGGGCcggGCacgGAGa -3'
miRNA:   3'- -CCGUGGCGC-GUCCUG--------CCCGa--CGa--CUU- -5'
10778 5' -61.5 NC_002794.1 + 126558 0.69 0.504859
Target:  5'- -aCACCGuCGCcGcGGCGGuGCUGCUGAu -3'
miRNA:   3'- ccGUGGC-GCGuC-CUGCC-CGACGACUu -5'
10778 5' -61.5 NC_002794.1 + 144818 0.69 0.504859
Target:  5'- gGGCGuCCGUGCAcgcGGACGaGCcGCUGGAg -3'
miRNA:   3'- -CCGU-GGCGCGU---CCUGCcCGaCGACUU- -5'
10778 5' -61.5 NC_002794.1 + 10339 0.69 0.514198
Target:  5'- cGGCGCCGCGaccgGGuGACGGaCUGCUcGAc -3'
miRNA:   3'- -CCGUGGCGCg---UC-CUGCCcGACGA-CUu -5'
10778 5' -61.5 NC_002794.1 + 87145 0.69 0.533079
Target:  5'- gGGUgcagGCCGgGCGGGugGGGgUGCa--- -3'
miRNA:   3'- -CCG----UGGCgCGUCCugCCCgACGacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.