miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10778 5' -61.5 NC_002794.1 + 89673 0.67 0.649913
Target:  5'- cGCGCgGCGguGGGaGGGCUGUUc-- -3'
miRNA:   3'- cCGUGgCGCguCCUgCCCGACGAcuu -5'
10778 5' -61.5 NC_002794.1 + 192006 0.67 0.640087
Target:  5'- cGGUAgCgGCGguGGcCGcGGCUGCUGu- -3'
miRNA:   3'- -CCGU-GgCGCguCCuGC-CCGACGACuu -5'
10778 5' -61.5 NC_002794.1 + 55946 0.67 0.640087
Target:  5'- aGGUGCCGCaGCAGGAaCGGGUaGUa--- -3'
miRNA:   3'- -CCGUGGCG-CGUCCU-GCCCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 92272 0.67 0.634188
Target:  5'- cGGCGCCGgGCgaggcgcgcaaggucGGcGACGaGGCgggGCUGGg -3'
miRNA:   3'- -CCGUGGCgCG---------------UC-CUGC-CCGa--CGACUu -5'
10778 5' -61.5 NC_002794.1 + 37739 0.67 0.630255
Target:  5'- cGGCGCCGCcgGCGGcGGCGcGGCgGCg--- -3'
miRNA:   3'- -CCGUGGCG--CGUC-CUGC-CCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 126399 0.67 0.620425
Target:  5'- cGGCGgCGUGCGcGGCGgucgcgaucuGGCUGCUGGu -3'
miRNA:   3'- -CCGUgGCGCGUcCUGC----------CCGACGACUu -5'
10778 5' -61.5 NC_002794.1 + 115962 0.67 0.620425
Target:  5'- gGGgACCGUgggggggaGCGGGACGGGgaGCg--- -3'
miRNA:   3'- -CCgUGGCG--------CGUCCUGCCCgaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 135745 0.67 0.620425
Target:  5'- cGCGCCGCGCccucgAGGAuCaGGCggUGCUGGc -3'
miRNA:   3'- cCGUGGCGCG-----UCCU-GcCCG--ACGACUu -5'
10778 5' -61.5 NC_002794.1 + 55804 0.68 0.600795
Target:  5'- aGCGCaGCGcCGGGcGCGGGCgcgcGCUGAu -3'
miRNA:   3'- cCGUGgCGC-GUCC-UGCCCGa---CGACUu -5'
10778 5' -61.5 NC_002794.1 + 55307 0.68 0.591009
Target:  5'- cGGCGUCGCgGCGGGcGCGGGCgGCUuccGAGg -3'
miRNA:   3'- -CCGUGGCG-CGUCC-UGCCCGaCGA---CUU- -5'
10778 5' -61.5 NC_002794.1 + 101274 0.68 0.591009
Target:  5'- cGGCGCCGgugGCGGcGGCGGGgaGgaGAc -3'
miRNA:   3'- -CCGUGGCg--CGUC-CUGCCCgaCgaCUu -5'
10778 5' -61.5 NC_002794.1 + 105916 0.68 0.591009
Target:  5'- cGGCgcuaccGCCGcCGCcGGACGGGCUggacgcGCUGu- -3'
miRNA:   3'- -CCG------UGGC-GCGuCCUGCCCGA------CGACuu -5'
10778 5' -61.5 NC_002794.1 + 189023 0.68 0.580277
Target:  5'- aGGCcaggagccgcucgACCGC-CAGcGGCGGGCUGCg--- -3'
miRNA:   3'- -CCG-------------UGGCGcGUC-CUGCCCGACGacuu -5'
10778 5' -61.5 NC_002794.1 + 122994 0.68 0.571527
Target:  5'- uGGUgcggGCCGUGCu-GACGGGCcgGCUGGc -3'
miRNA:   3'- -CCG----UGGCGCGucCUGCCCGa-CGACUu -5'
10778 5' -61.5 NC_002794.1 + 110630 0.68 0.571527
Target:  5'- cGGCGCCGCggcgGCGGGGuCGGGUUucuccggcgGCUGc- -3'
miRNA:   3'- -CCGUGGCG----CGUCCU-GCCCGA---------CGACuu -5'
10778 5' -61.5 NC_002794.1 + 58641 0.68 0.571527
Target:  5'- -uCGCCaCGCAGcugggcGACGGGCUGCUGc- -3'
miRNA:   3'- ccGUGGcGCGUC------CUGCCCGACGACuu -5'
10778 5' -61.5 NC_002794.1 + 58365 0.68 0.568617
Target:  5'- uGGCGCCGCccgacuuccaggagGCGcgcGGGCGccaGCUGCUGGAg -3'
miRNA:   3'- -CCGUGGCG--------------CGU---CCUGCc--CGACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 87271 0.68 0.561842
Target:  5'- gGGUgcagGCCGgGCGGGugGGGgUGggGAAg -3'
miRNA:   3'- -CCG----UGGCgCGUCCugCCCgACgaCUU- -5'
10778 5' -61.5 NC_002794.1 + 61887 0.68 0.552202
Target:  5'- cGGCGCCGCGCGGcGAgCGcGGCgaGCg--- -3'
miRNA:   3'- -CCGUGGCGCGUC-CU-GC-CCGa-CGacuu -5'
10778 5' -61.5 NC_002794.1 + 47945 0.69 0.533079
Target:  5'- cGGCGCCGCGCGuccCGGcGCcgGCUGGg -3'
miRNA:   3'- -CCGUGGCGCGUccuGCC-CGa-CGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.