miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10778 5' -61.5 NC_002794.1 + 10339 0.69 0.514198
Target:  5'- cGGCGCCGCGaccgGGuGACGGaCUGCUcGAc -3'
miRNA:   3'- -CCGUGGCGCg---UC-CUGCCcGACGA-CUu -5'
10778 5' -61.5 NC_002794.1 + 14611 0.69 0.495595
Target:  5'- gGGCACCGCGaCGGGGCcggagacgGGGCcggGCacgGAGa -3'
miRNA:   3'- -CCGUGGCGC-GUCCUG--------CCCGa--CGa--CUU- -5'
10778 5' -61.5 NC_002794.1 + 31582 0.67 0.659726
Target:  5'- cGGCGCUGUGCAGuaagcaauacACGGGgaGCUcGAAc -3'
miRNA:   3'- -CCGUGGCGCGUCc---------UGCCCgaCGA-CUU- -5'
10778 5' -61.5 NC_002794.1 + 33640 0.7 0.468283
Target:  5'- cGGCACCGcCGC---ACGGGCgcGCUGAGc -3'
miRNA:   3'- -CCGUGGC-GCGuccUGCCCGa-CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 34838 0.66 0.707369
Target:  5'- cGGCGCCGgaGCGGGcgucggaGCGGGCgccGCgGGc -3'
miRNA:   3'- -CCGUGGCg-CGUCC-------UGCCCGa--CGaCUu -5'
10778 5' -61.5 NC_002794.1 + 37739 0.67 0.630255
Target:  5'- cGGCGCCGCcgGCGGcGGCGcGGCgGCg--- -3'
miRNA:   3'- -CCGUGGCG--CGUC-CUGC-CCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 41862 0.73 0.330351
Target:  5'- aGGcCGCCGgGCAGGGcCGGGC-GCUGc- -3'
miRNA:   3'- -CC-GUGGCgCGUCCU-GCCCGaCGACuu -5'
10778 5' -61.5 NC_002794.1 + 47945 0.69 0.533079
Target:  5'- cGGCGCCGCGCGuccCGGcGCcgGCUGGg -3'
miRNA:   3'- -CCGUGGCGCGUccuGCC-CGa-CGACUu -5'
10778 5' -61.5 NC_002794.1 + 49251 0.67 0.649913
Target:  5'- gGGCGcCCGCGCAcccacGACGGGC-GCUc-- -3'
miRNA:   3'- -CCGU-GGCGCGUc----CUGCCCGaCGAcuu -5'
10778 5' -61.5 NC_002794.1 + 55307 0.68 0.591009
Target:  5'- cGGCGUCGCgGCGGGcGCGGGCgGCUuccGAGg -3'
miRNA:   3'- -CCGUGGCG-CGUCC-UGCCCGaCGA---CUU- -5'
10778 5' -61.5 NC_002794.1 + 55804 0.68 0.600795
Target:  5'- aGCGCaGCGcCGGGcGCGGGCgcgcGCUGAu -3'
miRNA:   3'- cCGUGgCGC-GUCC-UGCCCGa---CGACUu -5'
10778 5' -61.5 NC_002794.1 + 55946 0.67 0.640087
Target:  5'- aGGUGCCGCaGCAGGAaCGGGUaGUa--- -3'
miRNA:   3'- -CCGUGGCG-CGUCCU-GCCCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 56899 0.73 0.330351
Target:  5'- aGGUGCCGCGCGuGGccACGGGCgccggGCUGc- -3'
miRNA:   3'- -CCGUGGCGCGU-CC--UGCCCGa----CGACuu -5'
10778 5' -61.5 NC_002794.1 + 58069 0.69 0.495595
Target:  5'- cGGCGgCG-GCGGGACGGGCgGCc--- -3'
miRNA:   3'- -CCGUgGCgCGUCCUGCCCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 58365 0.68 0.568617
Target:  5'- uGGCGCCGCccgacuuccaggagGCGcgcGGGCGccaGCUGCUGGAg -3'
miRNA:   3'- -CCGUGGCG--------------CGU---CCUGCc--CGACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 58641 0.68 0.571527
Target:  5'- -uCGCCaCGCAGcugggcGACGGGCUGCUGc- -3'
miRNA:   3'- ccGUGGcGCGUC------CUGCCCGACGACuu -5'
10778 5' -61.5 NC_002794.1 + 58722 0.7 0.485494
Target:  5'- uGCACCGCGUcucgcgccucagcGGGcucaACGGGCaGCUGGc -3'
miRNA:   3'- cCGUGGCGCG-------------UCC----UGCCCGaCGACUu -5'
10778 5' -61.5 NC_002794.1 + 61887 0.68 0.552202
Target:  5'- cGGCGCCGCGCGGcGAgCGcGGCgaGCg--- -3'
miRNA:   3'- -CCGUGGCGCGUC-CU-GC-CCGa-CGacuu -5'
10778 5' -61.5 NC_002794.1 + 66856 0.66 0.679282
Target:  5'- cGGCGCgGCG-AGGcCGcGGCgugcgGCUGAGc -3'
miRNA:   3'- -CCGUGgCGCgUCCuGC-CCGa----CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 68345 0.66 0.717904
Target:  5'- gGGUucauCCGCcaAGaGACGGGCcUGCUGAu -3'
miRNA:   3'- -CCGu---GGCGcgUC-CUGCCCG-ACGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.