miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10778 5' -61.5 NC_002794.1 + 87078 0.7 0.441765
Target:  5'- aGCACgGUGCAGGcCGGGCgGgUGGGg -3'
miRNA:   3'- cCGUGgCGCGUCCuGCCCGaCgACUU- -5'
10778 5' -61.5 NC_002794.1 + 87103 0.69 0.533079
Target:  5'- gGGUgcagGCCGgGCGGGugGGGgUGCa--- -3'
miRNA:   3'- -CCG----UGGCgCGUCCugCCCgACGacuu -5'
10778 5' -61.5 NC_002794.1 + 87145 0.69 0.533079
Target:  5'- gGGUgcagGCCGgGCGGGugGGGgUGCa--- -3'
miRNA:   3'- -CCG----UGGCgCGUCCugCCCgACGacuu -5'
10778 5' -61.5 NC_002794.1 + 87187 0.69 0.533079
Target:  5'- gGGUgcagGCCGgGCGGGugGGGgUGCa--- -3'
miRNA:   3'- -CCG----UGGCgCGUCCugCCCgACGacuu -5'
10778 5' -61.5 NC_002794.1 + 87229 0.69 0.533079
Target:  5'- gGGUgcagGCCGgGCGGGugGGGgUGCa--- -3'
miRNA:   3'- -CCG----UGGCgCGUCCugCCCgACGacuu -5'
10778 5' -61.5 NC_002794.1 + 87271 0.68 0.561842
Target:  5'- gGGUgcagGCCGgGCGGGugGGGgUGggGAAg -3'
miRNA:   3'- -CCG----UGGCgCGUCCugCCCgACgaCUU- -5'
10778 5' -61.5 NC_002794.1 + 89673 0.67 0.649913
Target:  5'- cGCGCgGCGguGGGaGGGCUGUUc-- -3'
miRNA:   3'- cCGUGgCGCguCCUgCCCGACGAcuu -5'
10778 5' -61.5 NC_002794.1 + 91124 0.78 0.160637
Target:  5'- uGGUGCCGUGCGuggaggaggcgcGGACGGuGCUGCUGGg -3'
miRNA:   3'- -CCGUGGCGCGU------------CCUGCC-CGACGACUu -5'
10778 5' -61.5 NC_002794.1 + 91764 1.08 0.001246
Target:  5'- cGGCACCGCGCAGGACGGGCUGCUGAAg -3'
miRNA:   3'- -CCGUGGCGCGUCCUGCCCGACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 92272 0.67 0.634188
Target:  5'- cGGCGCCGgGCgaggcgcgcaaggucGGcGACGaGGCgggGCUGGg -3'
miRNA:   3'- -CCGUGGCgCG---------------UC-CUGC-CCGa--CGACUu -5'
10778 5' -61.5 NC_002794.1 + 92960 0.66 0.679282
Target:  5'- cGGCccaucCCGCGCGGcGGCaagGGGCUGCc--- -3'
miRNA:   3'- -CCGu----GGCGCGUC-CUG---CCCGACGacuu -5'
10778 5' -61.5 NC_002794.1 + 101274 0.68 0.591009
Target:  5'- cGGCGCCGgugGCGGcGGCGGGgaGgaGAc -3'
miRNA:   3'- -CCGUGGCg--CGUC-CUGCCCgaCgaCUu -5'
10778 5' -61.5 NC_002794.1 + 102517 0.73 0.302563
Target:  5'- uGGCGCgCGCGCGGGAcgaccucuucuCGGGCcGCgUGGAg -3'
miRNA:   3'- -CCGUG-GCGCGUCCU-----------GCCCGaCG-ACUU- -5'
10778 5' -61.5 NC_002794.1 + 104278 0.66 0.679282
Target:  5'- cGGCACCGUGCcgaacAGGAucuCGGGCcgggUGCa--- -3'
miRNA:   3'- -CCGUGGCGCG-----UCCU---GCCCG----ACGacuu -5'
10778 5' -61.5 NC_002794.1 + 104318 0.7 0.459351
Target:  5'- aGGUugGCCGCGCAGuACGGGUcGCaGAAg -3'
miRNA:   3'- -CCG--UGGCGCGUCcUGCCCGaCGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 104490 0.66 0.70833
Target:  5'- cGGcCACgGCGgcCGGGuCGGGCgagaacggGCUGAGg -3'
miRNA:   3'- -CC-GUGgCGC--GUCCuGCCCGa-------CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 105916 0.68 0.591009
Target:  5'- cGGCgcuaccGCCGcCGCcGGACGGGCUggacgcGCUGu- -3'
miRNA:   3'- -CCG------UGGC-GCGuCCUGCCCGA------CGACuu -5'
10778 5' -61.5 NC_002794.1 + 106414 0.66 0.679282
Target:  5'- cGGCGgCGC-CGGGGCucauGGcGCUGUUGGAg -3'
miRNA:   3'- -CCGUgGCGcGUCCUG----CC-CGACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 106987 0.66 0.689011
Target:  5'- cGGCACgGCGguGG-CGGcGCUGgCcGAc -3'
miRNA:   3'- -CCGUGgCGCguCCuGCC-CGAC-GaCUu -5'
10778 5' -61.5 NC_002794.1 + 110630 0.68 0.571527
Target:  5'- cGGCGCCGCggcgGCGGGGuCGGGUUucuccggcgGCUGc- -3'
miRNA:   3'- -CCGUGGCG----CGUCCU-GCCCGA---------CGACuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.