miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10778 5' -61.5 NC_002794.1 + 192961 0.66 0.669518
Target:  5'- aGGCcgacgaGCCGUGCAGGACcaGGGC-GCg--- -3'
miRNA:   3'- -CCG------UGGCGCGUCCUG--CCCGaCGacuu -5'
10778 5' -61.5 NC_002794.1 + 192006 0.67 0.640087
Target:  5'- cGGUAgCgGCGguGGcCGcGGCUGCUGu- -3'
miRNA:   3'- -CCGU-GgCGCguCCuGC-CCGACGACuu -5'
10778 5' -61.5 NC_002794.1 + 189023 0.68 0.580277
Target:  5'- aGGCcaggagccgcucgACCGC-CAGcGGCGGGCUGCg--- -3'
miRNA:   3'- -CCG-------------UGGCGcGUC-CUGCCCGACGacuu -5'
10778 5' -61.5 NC_002794.1 + 184033 0.72 0.38338
Target:  5'- cGGCACCGCGCGcagcgcgcGGucGCGGGCcGCggcGAAg -3'
miRNA:   3'- -CCGUGGCGCGU--------CC--UGCCCGaCGa--CUU- -5'
10778 5' -61.5 NC_002794.1 + 179632 0.66 0.68804
Target:  5'- gGGCGCUGCGaCGGaaaggagaagucaGGCGGGCUcGCcGGAc -3'
miRNA:   3'- -CCGUGGCGC-GUC-------------CUGCCCGA-CGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 144818 0.69 0.504859
Target:  5'- gGGCGuCCGUGCAcgcGGACGaGCcGCUGGAg -3'
miRNA:   3'- -CCGU-GGCGCGU---CCUGCcCGaCGACUU- -5'
10778 5' -61.5 NC_002794.1 + 139998 0.66 0.717904
Target:  5'- cGGgACgGUGCGGGugGaGGCcGCgGAGg -3'
miRNA:   3'- -CCgUGgCGCGUCCugC-CCGaCGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 135745 0.67 0.620425
Target:  5'- cGCGCCGCGCccucgAGGAuCaGGCggUGCUGGc -3'
miRNA:   3'- cCGUGGCGCG-----UCCU-GcCCG--ACGACUu -5'
10778 5' -61.5 NC_002794.1 + 130211 0.7 0.468283
Target:  5'- --gGCCGUGCAGGcgaccgACGGGCUcCUGAGa -3'
miRNA:   3'- ccgUGGCGCGUCC------UGCCCGAcGACUU- -5'
10778 5' -61.5 NC_002794.1 + 128161 0.66 0.698696
Target:  5'- cGGCGgcUCGCGCcgcGGACGGGUcGgUGAc -3'
miRNA:   3'- -CCGU--GGCGCGu--CCUGCCCGaCgACUu -5'
10778 5' -61.5 NC_002794.1 + 127079 0.66 0.70833
Target:  5'- aGCGCC-CGCcGGACcGGCUGgaGAGc -3'
miRNA:   3'- cCGUGGcGCGuCCUGcCCGACgaCUU- -5'
10778 5' -61.5 NC_002794.1 + 126704 0.66 0.679282
Target:  5'- gGGCGCCGCGgacuCGGGGCGaGGggGgUGGGu -3'
miRNA:   3'- -CCGUGGCGC----GUCCUGC-CCgaCgACUU- -5'
10778 5' -61.5 NC_002794.1 + 126558 0.69 0.504859
Target:  5'- -aCACCGuCGCcGcGGCGGuGCUGCUGAu -3'
miRNA:   3'- ccGUGGC-GCGuC-CUGCC-CGACGACUu -5'
10778 5' -61.5 NC_002794.1 + 126399 0.67 0.620425
Target:  5'- cGGCGgCGUGCGcGGCGgucgcgaucuGGCUGCUGGu -3'
miRNA:   3'- -CCGUgGCGCGUcCUGC----------CCGACGACUu -5'
10778 5' -61.5 NC_002794.1 + 126296 0.66 0.72741
Target:  5'- uGCGCCGCGCGccuGGCGGuGCaGCgGAGc -3'
miRNA:   3'- cCGUGGCGCGUc--CUGCC-CGaCGaCUU- -5'
10778 5' -61.5 NC_002794.1 + 123539 0.66 0.689011
Target:  5'- gGGCACaCGCGCuacagccGCGGGCUGUUc-- -3'
miRNA:   3'- -CCGUG-GCGCGucc----UGCCCGACGAcuu -5'
10778 5' -61.5 NC_002794.1 + 122994 0.68 0.571527
Target:  5'- uGGUgcggGCCGUGCu-GACGGGCcgGCUGGc -3'
miRNA:   3'- -CCG----UGGCGCGucCUGCCCGa-CGACUu -5'
10778 5' -61.5 NC_002794.1 + 122577 0.66 0.689011
Target:  5'- cGGCuGCUGgGgaugaugaAGGACGGGCUggcGCUGAGc -3'
miRNA:   3'- -CCG-UGGCgCg-------UCCUGCCCGA---CGACUU- -5'
10778 5' -61.5 NC_002794.1 + 120258 0.71 0.416118
Target:  5'- cGCGCuucuuCGUGCAGGA-GGGCuUGCUGGAg -3'
miRNA:   3'- cCGUG-----GCGCGUCCUgCCCG-ACGACUU- -5'
10778 5' -61.5 NC_002794.1 + 115962 0.67 0.620425
Target:  5'- gGGgACCGUgggggggaGCGGGACGGGgaGCg--- -3'
miRNA:   3'- -CCgUGGCG--------CGUCCUGCCCgaCGacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.