miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 78441 0.66 0.994999
Target:  5'- uCGCGGCGGA-CGCGGAcg-CGcucGCGg- -3'
miRNA:   3'- -GCGCCGUCUaGCGCUUauaGC---UGCac -5'
10779 3' -52.2 NC_002794.1 + 128262 0.66 0.994999
Target:  5'- uCGCGGuCGGGgccgagCGCGGAgc-CGACGg- -3'
miRNA:   3'- -GCGCC-GUCUa-----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 30314 0.66 0.994999
Target:  5'- gGCGG-AGAUUGCGAggAUCGuCGc- -3'
miRNA:   3'- gCGCCgUCUAGCGCUuaUAGCuGCac -5'
10779 3' -52.2 NC_002794.1 + 61166 0.66 0.994999
Target:  5'- gCGCGGUccGGAUCGgCGGcugGUCGcuCGUGc -3'
miRNA:   3'- -GCGCCG--UCUAGC-GCUua-UAGCu-GCAC- -5'
10779 3' -52.2 NC_002794.1 + 175432 0.66 0.994217
Target:  5'- cCGCGGCGcagacGAUCGuCGucgAUCaACGUGg -3'
miRNA:   3'- -GCGCCGU-----CUAGC-GCuuaUAGcUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 187588 0.66 0.994217
Target:  5'- gCGCGGCcgccGUCGCGAcgccCGGCGUc -3'
miRNA:   3'- -GCGCCGuc--UAGCGCUuauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 142215 0.66 0.994217
Target:  5'- gGCGGCAGcggcggUGCGGGgagCGGCGg- -3'
miRNA:   3'- gCGCCGUCua----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 20035 0.66 0.993338
Target:  5'- gCGCGGUccGGAUCGCGc---UCGACc-- -3'
miRNA:   3'- -GCGCCG--UCUAGCGCuuauAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 139589 0.66 0.993338
Target:  5'- gGCGGUGGAUgaCGCGGuaacgGUCGACc-- -3'
miRNA:   3'- gCGCCGUCUA--GCGCUua---UAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 100457 0.66 0.993338
Target:  5'- gGCGGCGGcgccuucccgGUgGCGGAgaaccuggaCGACGUGg -3'
miRNA:   3'- gCGCCGUC----------UAgCGCUUaua------GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 143161 0.66 0.993338
Target:  5'- aCGCGGUgaagcgccAGAgcUUGCGGcgGuucUCGACGUGc -3'
miRNA:   3'- -GCGCCG--------UCU--AGCGCUuaU---AGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 132316 0.66 0.992356
Target:  5'- aGCGuGguGAUCGgGGAcAUCGACu-- -3'
miRNA:   3'- gCGC-CguCUAGCgCUUaUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 55302 0.66 0.992356
Target:  5'- gGCGGCGGcGUCGCGGcgGgcgCGGgCGg- -3'
miRNA:   3'- gCGCCGUC-UAGCGCUuaUa--GCU-GCac -5'
10779 3' -52.2 NC_002794.1 + 26275 0.66 0.992356
Target:  5'- gGCGGCucGAUCGCcgg-AUCGACa-- -3'
miRNA:   3'- gCGCCGu-CUAGCGcuuaUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 108603 0.66 0.992356
Target:  5'- gCGCGGCcgaccuGGUCGCGGugguGUGUCGgaacuGCGg- -3'
miRNA:   3'- -GCGCCGu-----CUAGCGCU----UAUAGC-----UGCac -5'
10779 3' -52.2 NC_002794.1 + 125544 0.66 0.992356
Target:  5'- gCGCGGCGGca-GCGGuuucuUCGGCGa- -3'
miRNA:   3'- -GCGCCGUCuagCGCUuau--AGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 121340 0.66 0.992356
Target:  5'- gCGCGGCuGAgaaacCGgGAAguucGUCGACGg- -3'
miRNA:   3'- -GCGCCGuCUa----GCgCUUa---UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 179116 0.66 0.992356
Target:  5'- cCGCGGUccgGGcgCGCGGucgGUCGAuCGUc -3'
miRNA:   3'- -GCGCCG---UCuaGCGCUua-UAGCU-GCAc -5'
10779 3' -52.2 NC_002794.1 + 70667 0.66 0.991262
Target:  5'- gCGCGGCGGccgcCGCGGcgGU-GACGUc -3'
miRNA:   3'- -GCGCCGUCua--GCGCUuaUAgCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 155685 0.66 0.991262
Target:  5'- uGUGGCAGAUCGgcuCGGugAUCGcguccaacACGUGg -3'
miRNA:   3'- gCGCCGUCUAGC---GCUuaUAGC--------UGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.