Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10779 | 3' | -52.2 | NC_002794.1 | + | 78441 | 0.66 | 0.994999 |
Target: 5'- uCGCGGCGGA-CGCGGAcg-CGcucGCGg- -3' miRNA: 3'- -GCGCCGUCUaGCGCUUauaGC---UGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 121340 | 0.66 | 0.992356 |
Target: 5'- gCGCGGCuGAgaaacCGgGAAguucGUCGACGg- -3' miRNA: 3'- -GCGCCGuCUa----GCgCUUa---UAGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 125544 | 0.66 | 0.992356 |
Target: 5'- gCGCGGCGGca-GCGGuuucuUCGGCGa- -3' miRNA: 3'- -GCGCCGUCuagCGCUuau--AGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 108603 | 0.66 | 0.992356 |
Target: 5'- gCGCGGCcgaccuGGUCGCGGugguGUGUCGgaacuGCGg- -3' miRNA: 3'- -GCGCCGu-----CUAGCGCU----UAUAGC-----UGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 26275 | 0.66 | 0.992356 |
Target: 5'- gGCGGCucGAUCGCcgg-AUCGACa-- -3' miRNA: 3'- gCGCCGu-CUAGCGcuuaUAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 55302 | 0.66 | 0.992356 |
Target: 5'- gGCGGCGGcGUCGCGGcgGgcgCGGgCGg- -3' miRNA: 3'- gCGCCGUC-UAGCGCUuaUa--GCU-GCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 132316 | 0.66 | 0.992356 |
Target: 5'- aGCGuGguGAUCGgGGAcAUCGACu-- -3' miRNA: 3'- gCGC-CguCUAGCgCUUaUAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 70667 | 0.66 | 0.991262 |
Target: 5'- gCGCGGCGGccgcCGCGGcgGU-GACGUc -3' miRNA: 3'- -GCGCCGUCua--GCGCUuaUAgCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 155685 | 0.66 | 0.991262 |
Target: 5'- uGUGGCAGAUCGgcuCGGugAUCGcguccaacACGUGg -3' miRNA: 3'- gCGCCGUCUAGC---GCUuaUAGC--------UGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 179116 | 0.66 | 0.992356 |
Target: 5'- cCGCGGUccgGGcgCGCGGucgGUCGAuCGUc -3' miRNA: 3'- -GCGCCG---UCuaGCGCUua-UAGCU-GCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 20035 | 0.66 | 0.993338 |
Target: 5'- gCGCGGUccGGAUCGCGc---UCGACc-- -3' miRNA: 3'- -GCGCCG--UCUAGCGCuuauAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 139589 | 0.66 | 0.993338 |
Target: 5'- gGCGGUGGAUgaCGCGGuaacgGUCGACc-- -3' miRNA: 3'- gCGCCGUCUA--GCGCUua---UAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 128262 | 0.66 | 0.994999 |
Target: 5'- uCGCGGuCGGGgccgagCGCGGAgc-CGACGg- -3' miRNA: 3'- -GCGCC-GUCUa-----GCGCUUauaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 175432 | 0.66 | 0.994217 |
Target: 5'- cCGCGGCGcagacGAUCGuCGucgAUCaACGUGg -3' miRNA: 3'- -GCGCCGU-----CUAGC-GCuuaUAGcUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 30314 | 0.66 | 0.994999 |
Target: 5'- gGCGG-AGAUUGCGAggAUCGuCGc- -3' miRNA: 3'- gCGCCgUCUAGCGCUuaUAGCuGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 61166 | 0.66 | 0.994999 |
Target: 5'- gCGCGGUccGGAUCGgCGGcugGUCGcuCGUGc -3' miRNA: 3'- -GCGCCG--UCUAGC-GCUua-UAGCu-GCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 187588 | 0.66 | 0.994217 |
Target: 5'- gCGCGGCcgccGUCGCGAcgccCGGCGUc -3' miRNA: 3'- -GCGCCGuc--UAGCGCUuauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 143161 | 0.66 | 0.993338 |
Target: 5'- aCGCGGUgaagcgccAGAgcUUGCGGcgGuucUCGACGUGc -3' miRNA: 3'- -GCGCCG--------UCU--AGCGCUuaU---AGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 142215 | 0.66 | 0.994217 |
Target: 5'- gGCGGCAGcggcggUGCGGGgagCGGCGg- -3' miRNA: 3'- gCGCCGUCua----GCGCUUauaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 100457 | 0.66 | 0.993338 |
Target: 5'- gGCGGCGGcgccuucccgGUgGCGGAgaaccuggaCGACGUGg -3' miRNA: 3'- gCGCCGUC----------UAgCGCUUaua------GCUGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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