miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 88987 1.1 0.008766
Target:  5'- uCGCGGCAGAUCGCGAAUAUCGACGUGg -3'
miRNA:   3'- -GCGCCGUCUAGCGCUUAUAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 98679 0.83 0.336082
Target:  5'- aGCGGCAGAUCGaccuCGAcucgAUCGACGUGg -3'
miRNA:   3'- gCGCCGUCUAGC----GCUua--UAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 138685 0.8 0.491297
Target:  5'- gGCGGCGGGUCGUGAugcaaAUGagggCGGCGUGg -3'
miRNA:   3'- gCGCCGUCUAGCGCU-----UAUa---GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 54062 0.77 0.621088
Target:  5'- gGCGGCAGAUgGUcaGGAUGUUGGCGUu -3'
miRNA:   3'- gCGCCGUCUAgCG--CUUAUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 126408 0.75 0.740144
Target:  5'- gCGCGGCGG-UCGCGAucuggcugcugGUCGAgGUGu -3'
miRNA:   3'- -GCGCCGUCuAGCGCUua---------UAGCUgCAC- -5'
10779 3' -52.2 NC_002794.1 + 140107 0.75 0.73232
Target:  5'- gGCGGC-GAUCGaCGGcgGUCGACGgUGg -3'
miRNA:   3'- gCGCCGuCUAGC-GCUuaUAGCUGC-AC- -5'
10779 3' -52.2 NC_002794.1 + 127357 0.75 0.722461
Target:  5'- uCGCGGCGGcggCGCGGccgcucGUGUCGGCGg- -3'
miRNA:   3'- -GCGCCGUCua-GCGCU------UAUAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 65945 0.74 0.789324
Target:  5'- gGCGGCGGuaucGUCGCGAGcggCGGCGUc -3'
miRNA:   3'- gCGCCGUC----UAGCGCUUauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 90701 0.74 0.780124
Target:  5'- cCGCGGCAGGa--CGAAUGgugCGACGUGc -3'
miRNA:   3'- -GCGCCGUCUagcGCUUAUa--GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 169415 0.73 0.849282
Target:  5'- uGUGGCGGAUCGCgcgacauaaccaGAGUAUCGAUu-- -3'
miRNA:   3'- gCGCCGUCUAGCG------------CUUAUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 96574 0.72 0.864751
Target:  5'- aGCGGCuGGUCGUGAccuacaacGUCGACGg- -3'
miRNA:   3'- gCGCCGuCUAGCGCUua------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 14678 0.72 0.889103
Target:  5'- uCGCGGCGGcgGUCGCGcugcuccugaCGGCGUGg -3'
miRNA:   3'- -GCGCCGUC--UAGCGCuuaua-----GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 110245 0.72 0.879383
Target:  5'- cCGCGGCGGAgguuucccgCGCGGcGUcgCGACGg- -3'
miRNA:   3'- -GCGCCGUCUa--------GCGCU-UAuaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 145250 0.72 0.886371
Target:  5'- uGCGgaaGCGGAUCGCGAAgcgguUAUUGcCGUGg -3'
miRNA:   3'- gCGC---CGUCUAGCGCUU-----AUAGCuGCAC- -5'
10779 3' -52.2 NC_002794.1 + 86939 0.71 0.923463
Target:  5'- gCGgGGCgGGAUCcgGCGAGcGUCGACGUc -3'
miRNA:   3'- -GCgCCG-UCUAG--CGCUUaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 110533 0.71 0.912039
Target:  5'- uGCGGgAGAaCGCGGcgA-CGACGUGc -3'
miRNA:   3'- gCGCCgUCUaGCGCUuaUaGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 145471 0.71 0.905351
Target:  5'- aGCGGUcgccgaaggccgaGGAUCGCGAGgaugaGGCGUGc -3'
miRNA:   3'- gCGCCG-------------UCUAGCGCUUauag-CUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 94065 0.71 0.899026
Target:  5'- gGCGGCGGGggGCGAGggcaccuacgaccUGUCGGCGcUGu -3'
miRNA:   3'- gCGCCGUCUagCGCUU-------------AUAGCUGC-AC- -5'
10779 3' -52.2 NC_002794.1 + 138598 0.7 0.933931
Target:  5'- gCGCGGCGGAgagcggcuUUGUGAGUcgCGAUGc- -3'
miRNA:   3'- -GCGCCGUCU--------AGCGCUUAuaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 44367 0.7 0.928816
Target:  5'- gCGCGGCGGG-CGCGAcguccgCGACGc- -3'
miRNA:   3'- -GCGCCGUCUaGCGCUuaua--GCUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.