miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 44367 0.7 0.928816
Target:  5'- gCGCGGCGGG-CGCGAcguccgCGACGc- -3'
miRNA:   3'- -GCGCCGUCUaGCGCUuaua--GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 56340 0.7 0.943445
Target:  5'- aCGCGGCgaAGAgcagcUCGaagaGGcgGUCGACGUGc -3'
miRNA:   3'- -GCGCCG--UCU-----AGCg---CUuaUAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 185177 0.69 0.959673
Target:  5'- gCGCGGCGcGGUCgGCGcg-GUCGGCGc- -3'
miRNA:   3'- -GCGCCGU-CUAG-CGCuuaUAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 863 0.69 0.963166
Target:  5'- aGCGcGCGcc-CGCGAGgcgGUCGGCGUGc -3'
miRNA:   3'- gCGC-CGUcuaGCGCUUa--UAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 107220 0.69 0.963166
Target:  5'- cCGCcgGGCGGcgCGCGAcgGgggCGGCGUc -3'
miRNA:   3'- -GCG--CCGUCuaGCGCUuaUa--GCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 142368 0.69 0.959673
Target:  5'- gGCGGCGGAg-GCGGAgggagCGGCGg- -3'
miRNA:   3'- gCGCCGUCUagCGCUUaua--GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 184623 0.69 0.954801
Target:  5'- aGCGGCAGcguccacgaucggcGUCGCGucgg-CGGCGUa -3'
miRNA:   3'- gCGCCGUC--------------UAGCGCuuauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 189162 0.69 0.966442
Target:  5'- cCGCGGCAGGUCGUa------GACGUa -3'
miRNA:   3'- -GCGCCGUCUAGCGcuuauagCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 142332 0.69 0.952018
Target:  5'- gGCGGCGGAggcgGCGGAgg-CGGCGg- -3'
miRNA:   3'- gCGCCGUCUag--CGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 48854 0.68 0.979782
Target:  5'- -cCGGCAGggCGCGAuaGUccccGUCGGCGg- -3'
miRNA:   3'- gcGCCGUCuaGCGCU--UA----UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 116089 0.68 0.977497
Target:  5'- gCGCGGCGGucGUCGCcgggGUCGAgGUc -3'
miRNA:   3'- -GCGCCGUC--UAGCGcuuaUAGCUgCAc -5'
10779 3' -52.2 NC_002794.1 + 59192 0.68 0.979782
Target:  5'- cCGUGGCGGucgaCGCGcacGUCGGCGUc -3'
miRNA:   3'- -GCGCCGUCua--GCGCuuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 189046 0.68 0.981889
Target:  5'- aGCGGCGGGcugCGCGucgcGUA-CGGCGUc -3'
miRNA:   3'- gCGCCGUCUa--GCGCu---UAUaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 192159 0.68 0.977497
Target:  5'- uCGCGGCGGAgccUGCGGuagGUcCGGCGa- -3'
miRNA:   3'- -GCGCCGUCUa--GCGCUua-UA-GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 37267 0.68 0.981889
Target:  5'- cCGuCGGCGGGcgCGCGGGcg-CGGCGUa -3'
miRNA:   3'- -GC-GCCGUCUa-GCGCUUauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 117455 0.68 0.981889
Target:  5'- uCGCGGaAGAcgcCGCGGucGUCGGCGUa -3'
miRNA:   3'- -GCGCCgUCUa--GCGCUuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 146328 0.68 0.975028
Target:  5'- gCGCGGCGGAuucgaccccgUCGUcGAUcgCGGCGg- -3'
miRNA:   3'- -GCGCCGUCU----------AGCGcUUAuaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 141662 0.68 0.972367
Target:  5'- cCGcCGGCGGGUCgaGCGAAgacggGUCGcCGUa -3'
miRNA:   3'- -GC-GCCGUCUAG--CGCUUa----UAGCuGCAc -5'
10779 3' -52.2 NC_002794.1 + 67023 0.68 0.97425
Target:  5'- gGCGGCGGccggcucccgccgcGUCGCGGAcc-CGGCGUc -3'
miRNA:   3'- gCGCCGUC--------------UAGCGCUUauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 110055 0.68 0.972367
Target:  5'- uCGCGGauccguCGGAgagCGCGGAUcgCGGuCGUGa -3'
miRNA:   3'- -GCGCC------GUCUa--GCGCUUAuaGCU-GCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.