Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10779 | 3' | -52.2 | NC_002794.1 | + | 88987 | 1.1 | 0.008766 |
Target: 5'- uCGCGGCAGAUCGCGAAUAUCGACGUGg -3' miRNA: 3'- -GCGCCGUCUAGCGCUUAUAGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 98679 | 0.83 | 0.336082 |
Target: 5'- aGCGGCAGAUCGaccuCGAcucgAUCGACGUGg -3' miRNA: 3'- gCGCCGUCUAGC----GCUua--UAGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 138685 | 0.8 | 0.491297 |
Target: 5'- gGCGGCGGGUCGUGAugcaaAUGagggCGGCGUGg -3' miRNA: 3'- gCGCCGUCUAGCGCU-----UAUa---GCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 54062 | 0.77 | 0.621088 |
Target: 5'- gGCGGCAGAUgGUcaGGAUGUUGGCGUu -3' miRNA: 3'- gCGCCGUCUAgCG--CUUAUAGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 127357 | 0.75 | 0.722461 |
Target: 5'- uCGCGGCGGcggCGCGGccgcucGUGUCGGCGg- -3' miRNA: 3'- -GCGCCGUCua-GCGCU------UAUAGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 140107 | 0.75 | 0.73232 |
Target: 5'- gGCGGC-GAUCGaCGGcgGUCGACGgUGg -3' miRNA: 3'- gCGCCGuCUAGC-GCUuaUAGCUGC-AC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 126408 | 0.75 | 0.740144 |
Target: 5'- gCGCGGCGG-UCGCGAucuggcugcugGUCGAgGUGu -3' miRNA: 3'- -GCGCCGUCuAGCGCUua---------UAGCUgCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 90701 | 0.74 | 0.780124 |
Target: 5'- cCGCGGCAGGa--CGAAUGgugCGACGUGc -3' miRNA: 3'- -GCGCCGUCUagcGCUUAUa--GCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 65945 | 0.74 | 0.789324 |
Target: 5'- gGCGGCGGuaucGUCGCGAGcggCGGCGUc -3' miRNA: 3'- gCGCCGUC----UAGCGCUUauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 169415 | 0.73 | 0.849282 |
Target: 5'- uGUGGCGGAUCGCgcgacauaaccaGAGUAUCGAUu-- -3' miRNA: 3'- gCGCCGUCUAGCG------------CUUAUAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 96574 | 0.72 | 0.864751 |
Target: 5'- aGCGGCuGGUCGUGAccuacaacGUCGACGg- -3' miRNA: 3'- gCGCCGuCUAGCGCUua------UAGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 110245 | 0.72 | 0.879383 |
Target: 5'- cCGCGGCGGAgguuucccgCGCGGcGUcgCGACGg- -3' miRNA: 3'- -GCGCCGUCUa--------GCGCU-UAuaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 145250 | 0.72 | 0.886371 |
Target: 5'- uGCGgaaGCGGAUCGCGAAgcgguUAUUGcCGUGg -3' miRNA: 3'- gCGC---CGUCUAGCGCUU-----AUAGCuGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 14678 | 0.72 | 0.889103 |
Target: 5'- uCGCGGCGGcgGUCGCGcugcuccugaCGGCGUGg -3' miRNA: 3'- -GCGCCGUC--UAGCGCuuaua-----GCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 94065 | 0.71 | 0.899026 |
Target: 5'- gGCGGCGGGggGCGAGggcaccuacgaccUGUCGGCGcUGu -3' miRNA: 3'- gCGCCGUCUagCGCUU-------------AUAGCUGC-AC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 145471 | 0.71 | 0.905351 |
Target: 5'- aGCGGUcgccgaaggccgaGGAUCGCGAGgaugaGGCGUGc -3' miRNA: 3'- gCGCCG-------------UCUAGCGCUUauag-CUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 110533 | 0.71 | 0.912039 |
Target: 5'- uGCGGgAGAaCGCGGcgA-CGACGUGc -3' miRNA: 3'- gCGCCgUCUaGCGCUuaUaGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 86939 | 0.71 | 0.923463 |
Target: 5'- gCGgGGCgGGAUCcgGCGAGcGUCGACGUc -3' miRNA: 3'- -GCgCCG-UCUAG--CGCUUaUAGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 44367 | 0.7 | 0.928816 |
Target: 5'- gCGCGGCGGG-CGCGAcguccgCGACGc- -3' miRNA: 3'- -GCGCCGUCUaGCGCUuaua--GCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 138598 | 0.7 | 0.933931 |
Target: 5'- gCGCGGCGGAgagcggcuUUGUGAGUcgCGAUGc- -3' miRNA: 3'- -GCGCCGUCU--------AGCGCUUAuaGCUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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