miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 42572 0.67 0.990549
Target:  5'- cCGCGGCGGAccCGCGGAcggaggagggcgCGGCGg- -3'
miRNA:   3'- -GCGCCGUCUa-GCGCUUaua---------GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 94882 0.67 0.990048
Target:  5'- aCG-GaGCGGAUCcgGCuGAcgGUCGACGUGg -3'
miRNA:   3'- -GCgC-CGUCUAG--CG-CUuaUAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 156505 0.67 0.990048
Target:  5'- aGCGGCccguuGAUCGCGA--GUCcGCGg- -3'
miRNA:   3'- gCGCCGu----CUAGCGCUuaUAGcUGCac -5'
10779 3' -52.2 NC_002794.1 + 92267 0.67 0.990048
Target:  5'- gGCGGCGGcgCcggGCGAGgcgcgcaagGUCGGCGa- -3'
miRNA:   3'- gCGCCGUCuaG---CGCUUa--------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 31064 0.67 0.988706
Target:  5'- gGCGGcCAGcUCGCGcagcacGUCGAgCGUGg -3'
miRNA:   3'- gCGCC-GUCuAGCGCuua---UAGCU-GCAC- -5'
10779 3' -52.2 NC_002794.1 + 142302 0.67 0.988706
Target:  5'- gGCGGUacAGGUgGCGGAgg-CGGCGg- -3'
miRNA:   3'- gCGCCG--UCUAgCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 79442 0.67 0.987228
Target:  5'- gGCGGCGGcgaccggCGCGGAga-CGACGa- -3'
miRNA:   3'- gCGCCGUCua-----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 94482 0.67 0.987228
Target:  5'- gGCGGCGGA-CGCGGccg-CGGgcCGUGg -3'
miRNA:   3'- gCGCCGUCUaGCGCUuauaGCU--GCAC- -5'
10779 3' -52.2 NC_002794.1 + 71810 0.67 0.985604
Target:  5'- gCGCGGCgAGGccgccucgUCGCGAggAUCGcCGUc -3'
miRNA:   3'- -GCGCCG-UCU--------AGCGCUuaUAGCuGCAc -5'
10779 3' -52.2 NC_002794.1 + 87336 0.67 0.983827
Target:  5'- gGCGGCAGGUUccccagcaGCGggUccggCGGCGa- -3'
miRNA:   3'- gCGCCGUCUAG--------CGCuuAua--GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 126240 0.67 0.983827
Target:  5'- cCGUGGC-GAUCGUGGcgcgcgagGUCGGCGg- -3'
miRNA:   3'- -GCGCCGuCUAGCGCUua------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 36960 0.68 0.982091
Target:  5'- gGCGGCAGGcagUCGCGcAGgaggaucgcgcgcagGUCGGCGa- -3'
miRNA:   3'- gCGCCGUCU---AGCGC-UUa--------------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 117455 0.68 0.981889
Target:  5'- uCGCGGaAGAcgcCGCGGucGUCGGCGUa -3'
miRNA:   3'- -GCGCCgUCUa--GCGCUuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 189046 0.68 0.981889
Target:  5'- aGCGGCGGGcugCGCGucgcGUA-CGGCGUc -3'
miRNA:   3'- gCGCCGUCUa--GCGCu---UAUaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 37267 0.68 0.981889
Target:  5'- cCGuCGGCGGGcgCGCGGGcg-CGGCGUa -3'
miRNA:   3'- -GC-GCCGUCUa-GCGCUUauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 48595 0.68 0.981889
Target:  5'- aGCGGCGcGUCGCc---GUCGGCGUc -3'
miRNA:   3'- gCGCCGUcUAGCGcuuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 59192 0.68 0.979782
Target:  5'- cCGUGGCGGucgaCGCGcacGUCGGCGUc -3'
miRNA:   3'- -GCGCCGUCua--GCGCuuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 48854 0.68 0.979782
Target:  5'- -cCGGCAGggCGCGAuaGUccccGUCGGCGg- -3'
miRNA:   3'- gcGCCGUCuaGCGCU--UA----UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 192159 0.68 0.977497
Target:  5'- uCGCGGCGGAgccUGCGGuagGUcCGGCGa- -3'
miRNA:   3'- -GCGCCGUCUa--GCGCUua-UA-GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 191887 0.68 0.977497
Target:  5'- gGCGGCGGAg-GCGGG-AUCGGCa-- -3'
miRNA:   3'- gCGCCGUCUagCGCUUaUAGCUGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.