Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10779 | 3' | -52.2 | NC_002794.1 | + | 191887 | 0.68 | 0.977497 |
Target: 5'- gGCGGCGGAg-GCGGG-AUCGGCa-- -3' miRNA: 3'- gCGCCGUCUagCGCUUaUAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 267 | 0.68 | 0.977497 |
Target: 5'- gCGCGcGCGGA-CGCGAGga-CGGCGg- -3' miRNA: 3'- -GCGC-CGUCUaGCGCUUauaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 146328 | 0.68 | 0.975028 |
Target: 5'- gCGCGGCGGAuucgaccccgUCGUcGAUcgCGGCGg- -3' miRNA: 3'- -GCGCCGUCU----------AGCGcUUAuaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 4178 | 0.68 | 0.975028 |
Target: 5'- uCGCGGUGGGUCGuCGAGgcaaGGCGa- -3' miRNA: 3'- -GCGCCGUCUAGC-GCUUauagCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 11550 | 0.68 | 0.975028 |
Target: 5'- cCGCGGCuGGUCGCuaGAAUGUCaggGGCa-- -3' miRNA: 3'- -GCGCCGuCUAGCG--CUUAUAG---CUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 67023 | 0.68 | 0.97425 |
Target: 5'- gGCGGCGGccggcucccgccgcGUCGCGGAcc-CGGCGUc -3' miRNA: 3'- gCGCCGUC--------------UAGCGCUUauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 141662 | 0.68 | 0.972367 |
Target: 5'- cCGcCGGCGGGUCgaGCGAAgacggGUCGcCGUa -3' miRNA: 3'- -GC-GCCGUCUAG--CGCUUa----UAGCuGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 110055 | 0.68 | 0.972367 |
Target: 5'- uCGCGGauccguCGGAgagCGCGGAUcgCGGuCGUGa -3' miRNA: 3'- -GCGCC------GUCUa--GCGCUUAuaGCU-GCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 189162 | 0.69 | 0.966442 |
Target: 5'- cCGCGGCAGGUCGUa------GACGUa -3' miRNA: 3'- -GCGCCGUCUAGCGcuuauagCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 863 | 0.69 | 0.963166 |
Target: 5'- aGCGcGCGcc-CGCGAGgcgGUCGGCGUGc -3' miRNA: 3'- gCGC-CGUcuaGCGCUUa--UAGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 107220 | 0.69 | 0.963166 |
Target: 5'- cCGCcgGGCGGcgCGCGAcgGgggCGGCGUc -3' miRNA: 3'- -GCG--CCGUCuaGCGCUuaUa--GCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 142368 | 0.69 | 0.959673 |
Target: 5'- gGCGGCGGAg-GCGGAgggagCGGCGg- -3' miRNA: 3'- gCGCCGUCUagCGCUUaua--GCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 185177 | 0.69 | 0.959673 |
Target: 5'- gCGCGGCGcGGUCgGCGcg-GUCGGCGc- -3' miRNA: 3'- -GCGCCGU-CUAG-CGCuuaUAGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 184623 | 0.69 | 0.954801 |
Target: 5'- aGCGGCAGcguccacgaucggcGUCGCGucgg-CGGCGUa -3' miRNA: 3'- gCGCCGUC--------------UAGCGCuuauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 142332 | 0.69 | 0.952018 |
Target: 5'- gGCGGCGGAggcgGCGGAgg-CGGCGg- -3' miRNA: 3'- gCGCCGUCUag--CGCUUauaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 56340 | 0.7 | 0.943445 |
Target: 5'- aCGCGGCgaAGAgcagcUCGaagaGGcgGUCGACGUGc -3' miRNA: 3'- -GCGCCG--UCU-----AGCg---CUuaUAGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 143077 | 0.7 | 0.938807 |
Target: 5'- gGCGGCAGAcguaGUGGAgguugcgCGGCGUGu -3' miRNA: 3'- gCGCCGUCUag--CGCUUaua----GCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 138598 | 0.7 | 0.933931 |
Target: 5'- gCGCGGCGGAgagcggcuUUGUGAGUcgCGAUGc- -3' miRNA: 3'- -GCGCCGUCU--------AGCGCUUAuaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 44367 | 0.7 | 0.928816 |
Target: 5'- gCGCGGCGGG-CGCGAcguccgCGACGc- -3' miRNA: 3'- -GCGCCGUCUaGCGCUuaua--GCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 86939 | 0.71 | 0.923463 |
Target: 5'- gCGgGGCgGGAUCcgGCGAGcGUCGACGUc -3' miRNA: 3'- -GCgCCG-UCUAG--CGCUUaUAGCUGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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