miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 267 0.68 0.977497
Target:  5'- gCGCGcGCGGA-CGCGAGga-CGGCGg- -3'
miRNA:   3'- -GCGC-CGUCUaGCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 863 0.69 0.963166
Target:  5'- aGCGcGCGcc-CGCGAGgcgGUCGGCGUGc -3'
miRNA:   3'- gCGC-CGUcuaGCGCUUa--UAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 4178 0.68 0.975028
Target:  5'- uCGCGGUGGGUCGuCGAGgcaaGGCGa- -3'
miRNA:   3'- -GCGCCGUCUAGC-GCUUauagCUGCac -5'
10779 3' -52.2 NC_002794.1 + 11550 0.68 0.975028
Target:  5'- cCGCGGCuGGUCGCuaGAAUGUCaggGGCa-- -3'
miRNA:   3'- -GCGCCGuCUAGCG--CUUAUAG---CUGcac -5'
10779 3' -52.2 NC_002794.1 + 14678 0.72 0.889103
Target:  5'- uCGCGGCGGcgGUCGCGcugcuccugaCGGCGUGg -3'
miRNA:   3'- -GCGCCGUC--UAGCGCuuaua-----GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 20035 0.66 0.993338
Target:  5'- gCGCGGUccGGAUCGCGc---UCGACc-- -3'
miRNA:   3'- -GCGCCG--UCUAGCGCuuauAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 26275 0.66 0.992356
Target:  5'- gGCGGCucGAUCGCcgg-AUCGACa-- -3'
miRNA:   3'- gCGCCGu-CUAGCGcuuaUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 30314 0.66 0.994999
Target:  5'- gGCGG-AGAUUGCGAggAUCGuCGc- -3'
miRNA:   3'- gCGCCgUCUAGCGCUuaUAGCuGCac -5'
10779 3' -52.2 NC_002794.1 + 31064 0.67 0.988706
Target:  5'- gGCGGcCAGcUCGCGcagcacGUCGAgCGUGg -3'
miRNA:   3'- gCGCC-GUCuAGCGCuua---UAGCU-GCAC- -5'
10779 3' -52.2 NC_002794.1 + 36960 0.68 0.982091
Target:  5'- gGCGGCAGGcagUCGCGcAGgaggaucgcgcgcagGUCGGCGa- -3'
miRNA:   3'- gCGCCGUCU---AGCGC-UUa--------------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 37267 0.68 0.981889
Target:  5'- cCGuCGGCGGGcgCGCGGGcg-CGGCGUa -3'
miRNA:   3'- -GC-GCCGUCUa-GCGCUUauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 42572 0.67 0.990549
Target:  5'- cCGCGGCGGAccCGCGGAcggaggagggcgCGGCGg- -3'
miRNA:   3'- -GCGCCGUCUa-GCGCUUaua---------GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 44367 0.7 0.928816
Target:  5'- gCGCGGCGGG-CGCGAcguccgCGACGc- -3'
miRNA:   3'- -GCGCCGUCUaGCGCUuaua--GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 48595 0.68 0.981889
Target:  5'- aGCGGCGcGUCGCc---GUCGGCGUc -3'
miRNA:   3'- gCGCCGUcUAGCGcuuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 48854 0.68 0.979782
Target:  5'- -cCGGCAGggCGCGAuaGUccccGUCGGCGg- -3'
miRNA:   3'- gcGCCGUCuaGCGCU--UA----UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 54062 0.77 0.621088
Target:  5'- gGCGGCAGAUgGUcaGGAUGUUGGCGUu -3'
miRNA:   3'- gCGCCGUCUAgCG--CUUAUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 55302 0.66 0.992356
Target:  5'- gGCGGCGGcGUCGCGGcgGgcgCGGgCGg- -3'
miRNA:   3'- gCGCCGUC-UAGCGCUuaUa--GCU-GCac -5'
10779 3' -52.2 NC_002794.1 + 56340 0.7 0.943445
Target:  5'- aCGCGGCgaAGAgcagcUCGaagaGGcgGUCGACGUGc -3'
miRNA:   3'- -GCGCCG--UCU-----AGCg---CUuaUAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 59192 0.68 0.979782
Target:  5'- cCGUGGCGGucgaCGCGcacGUCGGCGUc -3'
miRNA:   3'- -GCGCCGUCua--GCGCuuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 61166 0.66 0.994999
Target:  5'- gCGCGGUccGGAUCGgCGGcugGUCGcuCGUGc -3'
miRNA:   3'- -GCGCCG--UCUAGC-GCUua-UAGCu-GCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.