miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 65945 0.74 0.789324
Target:  5'- gGCGGCGGuaucGUCGCGAGcggCGGCGUc -3'
miRNA:   3'- gCGCCGUC----UAGCGCUUauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 67023 0.68 0.97425
Target:  5'- gGCGGCGGccggcucccgccgcGUCGCGGAcc-CGGCGUc -3'
miRNA:   3'- gCGCCGUC--------------UAGCGCUUauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 70667 0.66 0.991262
Target:  5'- gCGCGGCGGccgcCGCGGcgGU-GACGUc -3'
miRNA:   3'- -GCGCCGUCua--GCGCUuaUAgCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 71810 0.67 0.985604
Target:  5'- gCGCGGCgAGGccgccucgUCGCGAggAUCGcCGUc -3'
miRNA:   3'- -GCGCCG-UCU--------AGCGCUuaUAGCuGCAc -5'
10779 3' -52.2 NC_002794.1 + 78441 0.66 0.994999
Target:  5'- uCGCGGCGGA-CGCGGAcg-CGcucGCGg- -3'
miRNA:   3'- -GCGCCGUCUaGCGCUUauaGC---UGCac -5'
10779 3' -52.2 NC_002794.1 + 79442 0.67 0.987228
Target:  5'- gGCGGCGGcgaccggCGCGGAga-CGACGa- -3'
miRNA:   3'- gCGCCGUCua-----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 86939 0.71 0.923463
Target:  5'- gCGgGGCgGGAUCcgGCGAGcGUCGACGUc -3'
miRNA:   3'- -GCgCCG-UCUAG--CGCUUaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 87336 0.67 0.983827
Target:  5'- gGCGGCAGGUUccccagcaGCGggUccggCGGCGa- -3'
miRNA:   3'- gCGCCGUCUAG--------CGCuuAua--GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 88987 1.1 0.008766
Target:  5'- uCGCGGCAGAUCGCGAAUAUCGACGUGg -3'
miRNA:   3'- -GCGCCGUCUAGCGCUUAUAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 90701 0.74 0.780124
Target:  5'- cCGCGGCAGGa--CGAAUGgugCGACGUGc -3'
miRNA:   3'- -GCGCCGUCUagcGCUUAUa--GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 92267 0.67 0.990048
Target:  5'- gGCGGCGGcgCcggGCGAGgcgcgcaagGUCGGCGa- -3'
miRNA:   3'- gCGCCGUCuaG---CGCUUa--------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 94065 0.71 0.899026
Target:  5'- gGCGGCGGGggGCGAGggcaccuacgaccUGUCGGCGcUGu -3'
miRNA:   3'- gCGCCGUCUagCGCUU-------------AUAGCUGC-AC- -5'
10779 3' -52.2 NC_002794.1 + 94482 0.67 0.987228
Target:  5'- gGCGGCGGA-CGCGGccg-CGGgcCGUGg -3'
miRNA:   3'- gCGCCGUCUaGCGCUuauaGCU--GCAC- -5'
10779 3' -52.2 NC_002794.1 + 94882 0.67 0.990048
Target:  5'- aCG-GaGCGGAUCcgGCuGAcgGUCGACGUGg -3'
miRNA:   3'- -GCgC-CGUCUAG--CG-CUuaUAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 96574 0.72 0.864751
Target:  5'- aGCGGCuGGUCGUGAccuacaacGUCGACGg- -3'
miRNA:   3'- gCGCCGuCUAGCGCUua------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 98679 0.83 0.336082
Target:  5'- aGCGGCAGAUCGaccuCGAcucgAUCGACGUGg -3'
miRNA:   3'- gCGCCGUCUAGC----GCUua--UAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 100457 0.66 0.993338
Target:  5'- gGCGGCGGcgccuucccgGUgGCGGAgaaccuggaCGACGUGg -3'
miRNA:   3'- gCGCCGUC----------UAgCGCUUaua------GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 107220 0.69 0.963166
Target:  5'- cCGCcgGGCGGcgCGCGAcgGgggCGGCGUc -3'
miRNA:   3'- -GCG--CCGUCuaGCGCUuaUa--GCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 108603 0.66 0.992356
Target:  5'- gCGCGGCcgaccuGGUCGCGGugguGUGUCGgaacuGCGg- -3'
miRNA:   3'- -GCGCCGu-----CUAGCGCU----UAUAGC-----UGCac -5'
10779 3' -52.2 NC_002794.1 + 110055 0.68 0.972367
Target:  5'- uCGCGGauccguCGGAgagCGCGGAUcgCGGuCGUGa -3'
miRNA:   3'- -GCGCC------GUCUa--GCGCUUAuaGCU-GCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.