miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 110245 0.72 0.879383
Target:  5'- cCGCGGCGGAgguuucccgCGCGGcGUcgCGACGg- -3'
miRNA:   3'- -GCGCCGUCUa--------GCGCU-UAuaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 110533 0.71 0.912039
Target:  5'- uGCGGgAGAaCGCGGcgA-CGACGUGc -3'
miRNA:   3'- gCGCCgUCUaGCGCUuaUaGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 116089 0.68 0.977497
Target:  5'- gCGCGGCGGucGUCGCcgggGUCGAgGUc -3'
miRNA:   3'- -GCGCCGUC--UAGCGcuuaUAGCUgCAc -5'
10779 3' -52.2 NC_002794.1 + 117455 0.68 0.981889
Target:  5'- uCGCGGaAGAcgcCGCGGucGUCGGCGUa -3'
miRNA:   3'- -GCGCCgUCUa--GCGCUuaUAGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 121340 0.66 0.992356
Target:  5'- gCGCGGCuGAgaaacCGgGAAguucGUCGACGg- -3'
miRNA:   3'- -GCGCCGuCUa----GCgCUUa---UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 125544 0.66 0.992356
Target:  5'- gCGCGGCGGca-GCGGuuucuUCGGCGa- -3'
miRNA:   3'- -GCGCCGUCuagCGCUuau--AGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 126240 0.67 0.983827
Target:  5'- cCGUGGC-GAUCGUGGcgcgcgagGUCGGCGg- -3'
miRNA:   3'- -GCGCCGuCUAGCGCUua------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 126408 0.75 0.740144
Target:  5'- gCGCGGCGG-UCGCGAucuggcugcugGUCGAgGUGu -3'
miRNA:   3'- -GCGCCGUCuAGCGCUua---------UAGCUgCAC- -5'
10779 3' -52.2 NC_002794.1 + 127357 0.75 0.722461
Target:  5'- uCGCGGCGGcggCGCGGccgcucGUGUCGGCGg- -3'
miRNA:   3'- -GCGCCGUCua-GCGCU------UAUAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 128262 0.66 0.994999
Target:  5'- uCGCGGuCGGGgccgagCGCGGAgc-CGACGg- -3'
miRNA:   3'- -GCGCC-GUCUa-----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 132316 0.66 0.992356
Target:  5'- aGCGuGguGAUCGgGGAcAUCGACu-- -3'
miRNA:   3'- gCGC-CguCUAGCgCUUaUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 138598 0.7 0.933931
Target:  5'- gCGCGGCGGAgagcggcuUUGUGAGUcgCGAUGc- -3'
miRNA:   3'- -GCGCCGUCU--------AGCGCUUAuaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 138685 0.8 0.491297
Target:  5'- gGCGGCGGGUCGUGAugcaaAUGagggCGGCGUGg -3'
miRNA:   3'- gCGCCGUCUAGCGCU-----UAUa---GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 139589 0.66 0.993338
Target:  5'- gGCGGUGGAUgaCGCGGuaacgGUCGACc-- -3'
miRNA:   3'- gCGCCGUCUA--GCGCUua---UAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 140107 0.75 0.73232
Target:  5'- gGCGGC-GAUCGaCGGcgGUCGACGgUGg -3'
miRNA:   3'- gCGCCGuCUAGC-GCUuaUAGCUGC-AC- -5'
10779 3' -52.2 NC_002794.1 + 141662 0.68 0.972367
Target:  5'- cCGcCGGCGGGUCgaGCGAAgacggGUCGcCGUa -3'
miRNA:   3'- -GC-GCCGUCUAG--CGCUUa----UAGCuGCAc -5'
10779 3' -52.2 NC_002794.1 + 142215 0.66 0.994217
Target:  5'- gGCGGCAGcggcggUGCGGGgagCGGCGg- -3'
miRNA:   3'- gCGCCGUCua----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 142302 0.67 0.988706
Target:  5'- gGCGGUacAGGUgGCGGAgg-CGGCGg- -3'
miRNA:   3'- gCGCCG--UCUAgCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 142332 0.69 0.952018
Target:  5'- gGCGGCGGAggcgGCGGAgg-CGGCGg- -3'
miRNA:   3'- gCGCCGUCUag--CGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 142368 0.69 0.959673
Target:  5'- gGCGGCGGAg-GCGGAgggagCGGCGg- -3'
miRNA:   3'- gCGCCGUCUagCGCUUaua--GCUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.