Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10779 | 3' | -52.2 | NC_002794.1 | + | 143077 | 0.7 | 0.938807 |
Target: 5'- gGCGGCAGAcguaGUGGAgguugcgCGGCGUGu -3' miRNA: 3'- gCGCCGUCUag--CGCUUaua----GCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 143161 | 0.66 | 0.993338 |
Target: 5'- aCGCGGUgaagcgccAGAgcUUGCGGcgGuucUCGACGUGc -3' miRNA: 3'- -GCGCCG--------UCU--AGCGCUuaU---AGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 145250 | 0.72 | 0.886371 |
Target: 5'- uGCGgaaGCGGAUCGCGAAgcgguUAUUGcCGUGg -3' miRNA: 3'- gCGC---CGUCUAGCGCUU-----AUAGCuGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 145471 | 0.71 | 0.905351 |
Target: 5'- aGCGGUcgccgaaggccgaGGAUCGCGAGgaugaGGCGUGc -3' miRNA: 3'- gCGCCG-------------UCUAGCGCUUauag-CUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 146328 | 0.68 | 0.975028 |
Target: 5'- gCGCGGCGGAuucgaccccgUCGUcGAUcgCGGCGg- -3' miRNA: 3'- -GCGCCGUCU----------AGCGcUUAuaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 155685 | 0.66 | 0.991262 |
Target: 5'- uGUGGCAGAUCGgcuCGGugAUCGcguccaacACGUGg -3' miRNA: 3'- gCGCCGUCUAGC---GCUuaUAGC--------UGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 156505 | 0.67 | 0.990048 |
Target: 5'- aGCGGCccguuGAUCGCGA--GUCcGCGg- -3' miRNA: 3'- gCGCCGu----CUAGCGCUuaUAGcUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 169415 | 0.73 | 0.849282 |
Target: 5'- uGUGGCGGAUCGCgcgacauaaccaGAGUAUCGAUu-- -3' miRNA: 3'- gCGCCGUCUAGCG------------CUUAUAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 175432 | 0.66 | 0.994217 |
Target: 5'- cCGCGGCGcagacGAUCGuCGucgAUCaACGUGg -3' miRNA: 3'- -GCGCCGU-----CUAGC-GCuuaUAGcUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 179116 | 0.66 | 0.992356 |
Target: 5'- cCGCGGUccgGGcgCGCGGucgGUCGAuCGUc -3' miRNA: 3'- -GCGCCG---UCuaGCGCUua-UAGCU-GCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 184623 | 0.69 | 0.954801 |
Target: 5'- aGCGGCAGcguccacgaucggcGUCGCGucgg-CGGCGUa -3' miRNA: 3'- gCGCCGUC--------------UAGCGCuuauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 185177 | 0.69 | 0.959673 |
Target: 5'- gCGCGGCGcGGUCgGCGcg-GUCGGCGc- -3' miRNA: 3'- -GCGCCGU-CUAG-CGCuuaUAGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 187588 | 0.66 | 0.994217 |
Target: 5'- gCGCGGCcgccGUCGCGAcgccCGGCGUc -3' miRNA: 3'- -GCGCCGuc--UAGCGCUuauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 189046 | 0.68 | 0.981889 |
Target: 5'- aGCGGCGGGcugCGCGucgcGUA-CGGCGUc -3' miRNA: 3'- gCGCCGUCUa--GCGCu---UAUaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 189162 | 0.69 | 0.966442 |
Target: 5'- cCGCGGCAGGUCGUa------GACGUa -3' miRNA: 3'- -GCGCCGUCUAGCGcuuauagCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 191887 | 0.68 | 0.977497 |
Target: 5'- gGCGGCGGAg-GCGGG-AUCGGCa-- -3' miRNA: 3'- gCGCCGUCUagCGCUUaUAGCUGcac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 192159 | 0.68 | 0.977497 |
Target: 5'- uCGCGGCGGAgccUGCGGuagGUcCGGCGa- -3' miRNA: 3'- -GCGCCGUCUa--GCGCUua-UA-GCUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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