miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 192159 0.68 0.977497
Target:  5'- uCGCGGCGGAgccUGCGGuagGUcCGGCGa- -3'
miRNA:   3'- -GCGCCGUCUa--GCGCUua-UA-GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 191887 0.68 0.977497
Target:  5'- gGCGGCGGAg-GCGGG-AUCGGCa-- -3'
miRNA:   3'- gCGCCGUCUagCGCUUaUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 189162 0.69 0.966442
Target:  5'- cCGCGGCAGGUCGUa------GACGUa -3'
miRNA:   3'- -GCGCCGUCUAGCGcuuauagCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 189046 0.68 0.981889
Target:  5'- aGCGGCGGGcugCGCGucgcGUA-CGGCGUc -3'
miRNA:   3'- gCGCCGUCUa--GCGCu---UAUaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 187588 0.66 0.994217
Target:  5'- gCGCGGCcgccGUCGCGAcgccCGGCGUc -3'
miRNA:   3'- -GCGCCGuc--UAGCGCUuauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 185177 0.69 0.959673
Target:  5'- gCGCGGCGcGGUCgGCGcg-GUCGGCGc- -3'
miRNA:   3'- -GCGCCGU-CUAG-CGCuuaUAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 184623 0.69 0.954801
Target:  5'- aGCGGCAGcguccacgaucggcGUCGCGucgg-CGGCGUa -3'
miRNA:   3'- gCGCCGUC--------------UAGCGCuuauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 179116 0.66 0.992356
Target:  5'- cCGCGGUccgGGcgCGCGGucgGUCGAuCGUc -3'
miRNA:   3'- -GCGCCG---UCuaGCGCUua-UAGCU-GCAc -5'
10779 3' -52.2 NC_002794.1 + 175432 0.66 0.994217
Target:  5'- cCGCGGCGcagacGAUCGuCGucgAUCaACGUGg -3'
miRNA:   3'- -GCGCCGU-----CUAGC-GCuuaUAGcUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 169415 0.73 0.849282
Target:  5'- uGUGGCGGAUCGCgcgacauaaccaGAGUAUCGAUu-- -3'
miRNA:   3'- gCGCCGUCUAGCG------------CUUAUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 156505 0.67 0.990048
Target:  5'- aGCGGCccguuGAUCGCGA--GUCcGCGg- -3'
miRNA:   3'- gCGCCGu----CUAGCGCUuaUAGcUGCac -5'
10779 3' -52.2 NC_002794.1 + 155685 0.66 0.991262
Target:  5'- uGUGGCAGAUCGgcuCGGugAUCGcguccaacACGUGg -3'
miRNA:   3'- gCGCCGUCUAGC---GCUuaUAGC--------UGCAC- -5'
10779 3' -52.2 NC_002794.1 + 146328 0.68 0.975028
Target:  5'- gCGCGGCGGAuucgaccccgUCGUcGAUcgCGGCGg- -3'
miRNA:   3'- -GCGCCGUCU----------AGCGcUUAuaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 145471 0.71 0.905351
Target:  5'- aGCGGUcgccgaaggccgaGGAUCGCGAGgaugaGGCGUGc -3'
miRNA:   3'- gCGCCG-------------UCUAGCGCUUauag-CUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 145250 0.72 0.886371
Target:  5'- uGCGgaaGCGGAUCGCGAAgcgguUAUUGcCGUGg -3'
miRNA:   3'- gCGC---CGUCUAGCGCUU-----AUAGCuGCAC- -5'
10779 3' -52.2 NC_002794.1 + 143161 0.66 0.993338
Target:  5'- aCGCGGUgaagcgccAGAgcUUGCGGcgGuucUCGACGUGc -3'
miRNA:   3'- -GCGCCG--------UCU--AGCGCUuaU---AGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 143077 0.7 0.938807
Target:  5'- gGCGGCAGAcguaGUGGAgguugcgCGGCGUGu -3'
miRNA:   3'- gCGCCGUCUag--CGCUUaua----GCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 142368 0.69 0.959673
Target:  5'- gGCGGCGGAg-GCGGAgggagCGGCGg- -3'
miRNA:   3'- gCGCCGUCUagCGCUUaua--GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 142332 0.69 0.952018
Target:  5'- gGCGGCGGAggcgGCGGAgg-CGGCGg- -3'
miRNA:   3'- gCGCCGUCUag--CGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 142302 0.67 0.988706
Target:  5'- gGCGGUacAGGUgGCGGAgg-CGGCGg- -3'
miRNA:   3'- gCGCCG--UCUAgCGCUUauaGCUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.