Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10779 | 3' | -52.2 | NC_002794.1 | + | 100457 | 0.66 | 0.993338 |
Target: 5'- gGCGGCGGcgccuucccgGUgGCGGAgaaccuggaCGACGUGg -3' miRNA: 3'- gCGCCGUC----------UAgCGCUUaua------GCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 98679 | 0.83 | 0.336082 |
Target: 5'- aGCGGCAGAUCGaccuCGAcucgAUCGACGUGg -3' miRNA: 3'- gCGCCGUCUAGC----GCUua--UAGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 96574 | 0.72 | 0.864751 |
Target: 5'- aGCGGCuGGUCGUGAccuacaacGUCGACGg- -3' miRNA: 3'- gCGCCGuCUAGCGCUua------UAGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 94882 | 0.67 | 0.990048 |
Target: 5'- aCG-GaGCGGAUCcgGCuGAcgGUCGACGUGg -3' miRNA: 3'- -GCgC-CGUCUAG--CG-CUuaUAGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 94482 | 0.67 | 0.987228 |
Target: 5'- gGCGGCGGA-CGCGGccg-CGGgcCGUGg -3' miRNA: 3'- gCGCCGUCUaGCGCUuauaGCU--GCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 94065 | 0.71 | 0.899026 |
Target: 5'- gGCGGCGGGggGCGAGggcaccuacgaccUGUCGGCGcUGu -3' miRNA: 3'- gCGCCGUCUagCGCUU-------------AUAGCUGC-AC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 92267 | 0.67 | 0.990048 |
Target: 5'- gGCGGCGGcgCcggGCGAGgcgcgcaagGUCGGCGa- -3' miRNA: 3'- gCGCCGUCuaG---CGCUUa--------UAGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 90701 | 0.74 | 0.780124 |
Target: 5'- cCGCGGCAGGa--CGAAUGgugCGACGUGc -3' miRNA: 3'- -GCGCCGUCUagcGCUUAUa--GCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 88987 | 1.1 | 0.008766 |
Target: 5'- uCGCGGCAGAUCGCGAAUAUCGACGUGg -3' miRNA: 3'- -GCGCCGUCUAGCGCUUAUAGCUGCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 87336 | 0.67 | 0.983827 |
Target: 5'- gGCGGCAGGUUccccagcaGCGggUccggCGGCGa- -3' miRNA: 3'- gCGCCGUCUAG--------CGCuuAua--GCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 86939 | 0.71 | 0.923463 |
Target: 5'- gCGgGGCgGGAUCcgGCGAGcGUCGACGUc -3' miRNA: 3'- -GCgCCG-UCUAG--CGCUUaUAGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 79442 | 0.67 | 0.987228 |
Target: 5'- gGCGGCGGcgaccggCGCGGAga-CGACGa- -3' miRNA: 3'- gCGCCGUCua-----GCGCUUauaGCUGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 78441 | 0.66 | 0.994999 |
Target: 5'- uCGCGGCGGA-CGCGGAcg-CGcucGCGg- -3' miRNA: 3'- -GCGCCGUCUaGCGCUUauaGC---UGCac -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 71810 | 0.67 | 0.985604 |
Target: 5'- gCGCGGCgAGGccgccucgUCGCGAggAUCGcCGUc -3' miRNA: 3'- -GCGCCG-UCU--------AGCGCUuaUAGCuGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 70667 | 0.66 | 0.991262 |
Target: 5'- gCGCGGCGGccgcCGCGGcgGU-GACGUc -3' miRNA: 3'- -GCGCCGUCua--GCGCUuaUAgCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 67023 | 0.68 | 0.97425 |
Target: 5'- gGCGGCGGccggcucccgccgcGUCGCGGAcc-CGGCGUc -3' miRNA: 3'- gCGCCGUC--------------UAGCGCUUauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 65945 | 0.74 | 0.789324 |
Target: 5'- gGCGGCGGuaucGUCGCGAGcggCGGCGUc -3' miRNA: 3'- gCGCCGUC----UAGCGCUUauaGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 61166 | 0.66 | 0.994999 |
Target: 5'- gCGCGGUccGGAUCGgCGGcugGUCGcuCGUGc -3' miRNA: 3'- -GCGCCG--UCUAGC-GCUua-UAGCu-GCAC- -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 59192 | 0.68 | 0.979782 |
Target: 5'- cCGUGGCGGucgaCGCGcacGUCGGCGUc -3' miRNA: 3'- -GCGCCGUCua--GCGCuuaUAGCUGCAc -5' |
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10779 | 3' | -52.2 | NC_002794.1 | + | 56340 | 0.7 | 0.943445 |
Target: 5'- aCGCGGCgaAGAgcagcUCGaagaGGcgGUCGACGUGc -3' miRNA: 3'- -GCGCCG--UCU-----AGCg---CUuaUAGCUGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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