miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 3' -52.2 NC_002794.1 + 187588 0.66 0.994217
Target:  5'- gCGCGGCcgccGUCGCGAcgccCGGCGUc -3'
miRNA:   3'- -GCGCCGuc--UAGCGCUuauaGCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 61166 0.66 0.994999
Target:  5'- gCGCGGUccGGAUCGgCGGcugGUCGcuCGUGc -3'
miRNA:   3'- -GCGCCG--UCUAGC-GCUua-UAGCu-GCAC- -5'
10779 3' -52.2 NC_002794.1 + 30314 0.66 0.994999
Target:  5'- gGCGG-AGAUUGCGAggAUCGuCGc- -3'
miRNA:   3'- gCGCCgUCUAGCGCUuaUAGCuGCac -5'
10779 3' -52.2 NC_002794.1 + 175432 0.66 0.994217
Target:  5'- cCGCGGCGcagacGAUCGuCGucgAUCaACGUGg -3'
miRNA:   3'- -GCGCCGU-----CUAGC-GCuuaUAGcUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 128262 0.66 0.994999
Target:  5'- uCGCGGuCGGGgccgagCGCGGAgc-CGACGg- -3'
miRNA:   3'- -GCGCC-GUCUa-----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 108603 0.66 0.992356
Target:  5'- gCGCGGCcgaccuGGUCGCGGugguGUGUCGgaacuGCGg- -3'
miRNA:   3'- -GCGCCGu-----CUAGCGCU----UAUAGC-----UGCac -5'
10779 3' -52.2 NC_002794.1 + 26275 0.66 0.992356
Target:  5'- gGCGGCucGAUCGCcgg-AUCGACa-- -3'
miRNA:   3'- gCGCCGu-CUAGCGcuuaUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 126240 0.67 0.983827
Target:  5'- cCGUGGC-GAUCGUGGcgcgcgagGUCGGCGg- -3'
miRNA:   3'- -GCGCCGuCUAGCGCUua------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 142302 0.67 0.988706
Target:  5'- gGCGGUacAGGUgGCGGAgg-CGGCGg- -3'
miRNA:   3'- gCGCCG--UCUAgCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 31064 0.67 0.988706
Target:  5'- gGCGGcCAGcUCGCGcagcacGUCGAgCGUGg -3'
miRNA:   3'- gCGCC-GUCuAGCGCuua---UAGCU-GCAC- -5'
10779 3' -52.2 NC_002794.1 + 94482 0.67 0.987228
Target:  5'- gGCGGCGGA-CGCGGccg-CGGgcCGUGg -3'
miRNA:   3'- gCGCCGUCUaGCGCUuauaGCU--GCAC- -5'
10779 3' -52.2 NC_002794.1 + 79442 0.67 0.987228
Target:  5'- gGCGGCGGcgaccggCGCGGAga-CGACGa- -3'
miRNA:   3'- gCGCCGUCua-----GCGCUUauaGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 92267 0.67 0.990048
Target:  5'- gGCGGCGGcgCcggGCGAGgcgcgcaagGUCGGCGa- -3'
miRNA:   3'- gCGCCGUCuaG---CGCUUa--------UAGCUGCac -5'
10779 3' -52.2 NC_002794.1 + 156505 0.67 0.990048
Target:  5'- aGCGGCccguuGAUCGCGA--GUCcGCGg- -3'
miRNA:   3'- gCGCCGu----CUAGCGCUuaUAGcUGCac -5'
10779 3' -52.2 NC_002794.1 + 94882 0.67 0.990048
Target:  5'- aCG-GaGCGGAUCcgGCuGAcgGUCGACGUGg -3'
miRNA:   3'- -GCgC-CGUCUAG--CG-CUuaUAGCUGCAC- -5'
10779 3' -52.2 NC_002794.1 + 42572 0.67 0.990549
Target:  5'- cCGCGGCGGAccCGCGGAcggaggagggcgCGGCGg- -3'
miRNA:   3'- -GCGCCGUCUa-GCGCUUaua---------GCUGCac -5'
10779 3' -52.2 NC_002794.1 + 155685 0.66 0.991262
Target:  5'- uGUGGCAGAUCGgcuCGGugAUCGcguccaacACGUGg -3'
miRNA:   3'- gCGCCGUCUAGC---GCUuaUAGC--------UGCAC- -5'
10779 3' -52.2 NC_002794.1 + 70667 0.66 0.991262
Target:  5'- gCGCGGCGGccgcCGCGGcgGU-GACGUc -3'
miRNA:   3'- -GCGCCGUCua--GCGCUuaUAgCUGCAc -5'
10779 3' -52.2 NC_002794.1 + 132316 0.66 0.992356
Target:  5'- aGCGuGguGAUCGgGGAcAUCGACu-- -3'
miRNA:   3'- gCGC-CguCUAGCgCUUaUAGCUGcac -5'
10779 3' -52.2 NC_002794.1 + 55302 0.66 0.992356
Target:  5'- gGCGGCGGcGUCGCGGcgGgcgCGGgCGg- -3'
miRNA:   3'- gCGCCGUC-UAGCGCUuaUa--GCU-GCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.