miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 5' -52 NC_002794.1 + 137320 0.66 0.996237
Target:  5'- cCACGguUCCG-CGgaaggUUCCGCGGacggCUCg -3'
miRNA:   3'- -GUGU--AGGCaGCaa---AAGGCGCCa---GAGg -5'
10779 5' -52 NC_002794.1 + 193122 0.66 0.996237
Target:  5'- uGCA-CCGUCG---UCgGCGGcagCUCCu -3'
miRNA:   3'- gUGUaGGCAGCaaaAGgCGCCa--GAGG- -5'
10779 5' -52 NC_002794.1 + 41358 0.66 0.996237
Target:  5'- uCACcgCCGUCGgccUUCgcgcuCGCGGcgcCUCCu -3'
miRNA:   3'- -GUGuaGGCAGCaa-AAG-----GCGCCa--GAGG- -5'
10779 5' -52 NC_002794.1 + 68927 0.66 0.996237
Target:  5'- gGCGUCC-UCGUcgcCCGCGGg--CCg -3'
miRNA:   3'- gUGUAGGcAGCAaaaGGCGCCagaGG- -5'
10779 5' -52 NC_002794.1 + 66011 0.66 0.996237
Target:  5'- gGCA-CCGaggCGg---CCGCGGUCgucgCCg -3'
miRNA:   3'- gUGUaGGCa--GCaaaaGGCGCCAGa---GG- -5'
10779 5' -52 NC_002794.1 + 187344 0.66 0.996237
Target:  5'- aGCAgcCCGUCGU---UCGCGGUCa-- -3'
miRNA:   3'- gUGUa-GGCAGCAaaaGGCGCCAGagg -5'
10779 5' -52 NC_002794.1 + 147623 0.66 0.996237
Target:  5'- gGCAggCGUCGgagagggUCCGCuaUCUCCg -3'
miRNA:   3'- gUGUagGCAGCaaa----AGGCGccAGAGG- -5'
10779 5' -52 NC_002794.1 + 141551 0.66 0.996237
Target:  5'- gCGCGaaUCCGccacccgCGg---CCGCGGcCUCCg -3'
miRNA:   3'- -GUGU--AGGCa------GCaaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 147710 0.66 0.995617
Target:  5'- gCACGUgCGccaGUa--CCGCGGUCUCa -3'
miRNA:   3'- -GUGUAgGCag-CAaaaGGCGCCAGAGg -5'
10779 5' -52 NC_002794.1 + 17416 0.66 0.995617
Target:  5'- ----aCCG-CGgccaUCGCGGUCUCCg -3'
miRNA:   3'- guguaGGCaGCaaaaGGCGCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 13592 0.66 0.994916
Target:  5'- gCACGaCCGUCG---UCCGgGGagaaCUCCa -3'
miRNA:   3'- -GUGUaGGCAGCaaaAGGCgCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 130655 0.66 0.994916
Target:  5'- cCGCcccgCCGcCGg---CCGCGGgCUCCg -3'
miRNA:   3'- -GUGua--GGCaGCaaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 180886 0.66 0.994453
Target:  5'- gCGCGcCCGgucucggccgcggacUCGg---CCGCGGUCUCg -3'
miRNA:   3'- -GUGUaGGC---------------AGCaaaaGGCGCCAGAGg -5'
10779 5' -52 NC_002794.1 + 186112 0.66 0.994126
Target:  5'- uCGCcgCCGcCGgg-UCCcCGGaUCUCCa -3'
miRNA:   3'- -GUGuaGGCaGCaaaAGGcGCC-AGAGG- -5'
10779 5' -52 NC_002794.1 + 63484 0.66 0.994126
Target:  5'- gGCcgCCGUCGacgacgCCGCGGcgucgUCgUCCg -3'
miRNA:   3'- gUGuaGGCAGCaaaa--GGCGCC-----AG-AGG- -5'
10779 5' -52 NC_002794.1 + 186046 0.66 0.994126
Target:  5'- gGCuggCCGUCGUUccccggUCCGUGGcCaCCg -3'
miRNA:   3'- gUGua-GGCAGCAAa-----AGGCGCCaGaGG- -5'
10779 5' -52 NC_002794.1 + 179104 0.66 0.993241
Target:  5'- -cCGUCCgGUCG---UCCGCGGUC-Cg -3'
miRNA:   3'- guGUAGG-CAGCaaaAGGCGCCAGaGg -5'
10779 5' -52 NC_002794.1 + 32771 0.66 0.993241
Target:  5'- gCGCGUCCGaacgccgguUCGUcaUCCcgguCGGUCUUCg -3'
miRNA:   3'- -GUGUAGGC---------AGCAaaAGGc---GCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 115389 0.66 0.993241
Target:  5'- gACcgCCGgccCGUg--CUGCGGaCUCCa -3'
miRNA:   3'- gUGuaGGCa--GCAaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 180247 0.66 0.993241
Target:  5'- uCAUAaCCGggaCGUguugUCCGCuucgccGGUCUCCu -3'
miRNA:   3'- -GUGUaGGCa--GCAaa--AGGCG------CCAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.