miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 5' -52 NC_002794.1 + 147710 0.66 0.995617
Target:  5'- gCACGUgCGccaGUa--CCGCGGUCUCa -3'
miRNA:   3'- -GUGUAgGCag-CAaaaGGCGCCAGAGg -5'
10779 5' -52 NC_002794.1 + 110222 0.67 0.988584
Target:  5'- gACGUCCGUCcggaucgaGUccUCCGCGGcggaggUUUCCc -3'
miRNA:   3'- gUGUAGGCAG--------CAaaAGGCGCC------AGAGG- -5'
10779 5' -52 NC_002794.1 + 40294 0.67 0.988584
Target:  5'- aCGCGUCCGUCGcg--CCGaggagggaCGGUUUUCc -3'
miRNA:   3'- -GUGUAGGCAGCaaaaGGC--------GCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 190666 0.67 0.991152
Target:  5'- uCGCGcCCGcCGcg--CCGCcgGGUCUCCa -3'
miRNA:   3'- -GUGUaGGCaGCaaaaGGCG--CCAGAGG- -5'
10779 5' -52 NC_002794.1 + 98968 0.67 0.991152
Target:  5'- gGCG-CCGUCGgcggcgCCGUGGcCUCg -3'
miRNA:   3'- gUGUaGGCAGCaaaa--GGCGCCaGAGg -5'
10779 5' -52 NC_002794.1 + 190525 0.67 0.991152
Target:  5'- cCGCGUgCCGaUCGUcgUCCaccaGCGGUCcgcgUCCg -3'
miRNA:   3'- -GUGUA-GGC-AGCAaaAGG----CGCCAG----AGG- -5'
10779 5' -52 NC_002794.1 + 126903 0.67 0.992147
Target:  5'- aCGCGUCCGUCGcgggggagacagcaUGUGGUgUCCu -3'
miRNA:   3'- -GUGUAGGCAGCaaaag---------GCGCCAgAGG- -5'
10779 5' -52 NC_002794.1 + 46325 0.68 0.979638
Target:  5'- gACGgcgCCGUCG----CCGCGGacggCUCCa -3'
miRNA:   3'- gUGUa--GGCAGCaaaaGGCGCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 29195 0.68 0.98369
Target:  5'- uCACcaGUCCGUCcg--UCCgGCGGUCggcggCCg -3'
miRNA:   3'- -GUG--UAGGCAGcaaaAGG-CGCCAGa----GG- -5'
10779 5' -52 NC_002794.1 + 104392 0.68 0.98369
Target:  5'- gUACGUCaggugGUCGUccgCCGCGGcCUCg -3'
miRNA:   3'- -GUGUAGg----CAGCAaaaGGCGCCaGAGg -5'
10779 5' -52 NC_002794.1 + 67041 0.68 0.98369
Target:  5'- cCGCGUCgCGgaccCGgcgUCCGUGGgCUCCu -3'
miRNA:   3'- -GUGUAG-GCa---GCaaaAGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 100093 0.68 0.984953
Target:  5'- cCACGUCCG-CGUgcggcgcgugcaGCGGUgCUCCa -3'
miRNA:   3'- -GUGUAGGCaGCAaaagg-------CGCCA-GAGG- -5'
10779 5' -52 NC_002794.1 + 40615 0.68 0.985471
Target:  5'- gGCGUCCGaC----UCCGCGGagUCCg -3'
miRNA:   3'- gUGUAGGCaGcaaaAGGCGCCagAGG- -5'
10779 5' -52 NC_002794.1 + 40572 0.68 0.985471
Target:  5'- uCGCG-CCGUCcugg-CCGCGGgcccUCUCCu -3'
miRNA:   3'- -GUGUaGGCAGcaaaaGGCGCC----AGAGG- -5'
10779 5' -52 NC_002794.1 + 133374 0.68 0.985471
Target:  5'- -uCGUCgGUCGUcgUCCGgCGGUCa-- -3'
miRNA:   3'- guGUAGgCAGCAaaAGGC-GCCAGagg -5'
10779 5' -52 NC_002794.1 + 179778 0.68 0.985471
Target:  5'- gCACGUagcgcccggucaCCGUCGUcaggUUCCacaCGGUCUCUu -3'
miRNA:   3'- -GUGUA------------GGCAGCAa---AAGGc--GCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 21971 0.68 0.985471
Target:  5'- cCGCGgcgCCGUCGUc-UCCGCGacccGUCgCCg -3'
miRNA:   3'- -GUGUa--GGCAGCAaaAGGCGC----CAGaGG- -5'
10779 5' -52 NC_002794.1 + 105644 0.69 0.966303
Target:  5'- aCGCGuucUCCGUCucg--CCGCGGcgcgCUCCg -3'
miRNA:   3'- -GUGU---AGGCAGcaaaaGGCGCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 41329 0.69 0.974883
Target:  5'- ---cUCCGagGUcuccUCCGgGGUCUCCg -3'
miRNA:   3'- guguAGGCagCAaa--AGGCgCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 30684 0.7 0.951911
Target:  5'- gCACGUCCGgcggaCGUgcacgUUCCGCcGGUUguacgCCa -3'
miRNA:   3'- -GUGUAGGCa----GCAa----AAGGCG-CCAGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.