Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10779 | 5' | -52 | NC_002794.1 | + | 21971 | 0.68 | 0.985471 |
Target: 5'- cCGCGgcgCCGUCGUc-UCCGCGacccGUCgCCg -3' miRNA: 3'- -GUGUa--GGCAGCAaaAGGCGC----CAGaGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 29195 | 0.68 | 0.98369 |
Target: 5'- uCACcaGUCCGUCcg--UCCgGCGGUCggcggCCg -3' miRNA: 3'- -GUG--UAGGCAGcaaaAGG-CGCCAGa----GG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 110222 | 0.67 | 0.988584 |
Target: 5'- gACGUCCGUCcggaucgaGUccUCCGCGGcggaggUUUCCc -3' miRNA: 3'- gUGUAGGCAG--------CAaaAGGCGCC------AGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 190525 | 0.67 | 0.991152 |
Target: 5'- cCGCGUgCCGaUCGUcgUCCaccaGCGGUCcgcgUCCg -3' miRNA: 3'- -GUGUA-GGC-AGCAaaAGG----CGCCAG----AGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 98968 | 0.67 | 0.991152 |
Target: 5'- gGCG-CCGUCGgcggcgCCGUGGcCUCg -3' miRNA: 3'- gUGUaGGCAGCaaaa--GGCGCCaGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 190666 | 0.67 | 0.991152 |
Target: 5'- uCGCGcCCGcCGcg--CCGCcgGGUCUCCa -3' miRNA: 3'- -GUGUaGGCaGCaaaaGGCG--CCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 40294 | 0.67 | 0.988584 |
Target: 5'- aCGCGUCCGUCGcg--CCGaggagggaCGGUUUUCc -3' miRNA: 3'- -GUGUAGGCAGCaaaaGGC--------GCCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 126903 | 0.67 | 0.992147 |
Target: 5'- aCGCGUCCGUCGcgggggagacagcaUGUGGUgUCCu -3' miRNA: 3'- -GUGUAGGCAGCaaaag---------GCGCCAgAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 68927 | 0.66 | 0.996237 |
Target: 5'- gGCGUCC-UCGUcgcCCGCGGg--CCg -3' miRNA: 3'- gUGUAGGcAGCAaaaGGCGCCagaGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 17416 | 0.66 | 0.995617 |
Target: 5'- ----aCCG-CGgccaUCGCGGUCUCCg -3' miRNA: 3'- guguaGGCaGCaaaaGGCGCCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 41358 | 0.66 | 0.996237 |
Target: 5'- uCACcgCCGUCGgccUUCgcgcuCGCGGcgcCUCCu -3' miRNA: 3'- -GUGuaGGCAGCaa-AAG-----GCGCCa--GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 180247 | 0.66 | 0.993241 |
Target: 5'- uCAUAaCCGggaCGUguugUCCGCuucgccGGUCUCCu -3' miRNA: 3'- -GUGUaGGCa--GCAaa--AGGCG------CCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 66011 | 0.66 | 0.996237 |
Target: 5'- gGCA-CCGaggCGg---CCGCGGUCgucgCCg -3' miRNA: 3'- gUGUaGGCa--GCaaaaGGCGCCAGa---GG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 180886 | 0.66 | 0.994453 |
Target: 5'- gCGCGcCCGgucucggccgcggacUCGg---CCGCGGUCUCg -3' miRNA: 3'- -GUGUaGGC---------------AGCaaaaGGCGCCAGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 130655 | 0.66 | 0.994916 |
Target: 5'- cCGCcccgCCGcCGg---CCGCGGgCUCCg -3' miRNA: 3'- -GUGua--GGCaGCaaaaGGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 13592 | 0.66 | 0.994916 |
Target: 5'- gCACGaCCGUCG---UCCGgGGagaaCUCCa -3' miRNA: 3'- -GUGUaGGCAGCaaaAGGCgCCa---GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 186112 | 0.66 | 0.994126 |
Target: 5'- uCGCcgCCGcCGgg-UCCcCGGaUCUCCa -3' miRNA: 3'- -GUGuaGGCaGCaaaAGGcGCC-AGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 63484 | 0.66 | 0.994126 |
Target: 5'- gGCcgCCGUCGacgacgCCGCGGcgucgUCgUCCg -3' miRNA: 3'- gUGuaGGCAGCaaaa--GGCGCC-----AG-AGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 115389 | 0.66 | 0.993241 |
Target: 5'- gACcgCCGgccCGUg--CUGCGGaCUCCa -3' miRNA: 3'- gUGuaGGCa--GCAaaaGGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 138799 | 0.66 | 0.993052 |
Target: 5'- gCACA-CCGUucaaaCGgagaccccgCCGCGGUCUCg -3' miRNA: 3'- -GUGUaGGCA-----GCaaaa-----GGCGCCAGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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