miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 5' -52 NC_002794.1 + 89022 1.11 0.007611
Target:  5'- cCACAUCCGUCGUUUUCCGCGGUCUCCc -3'
miRNA:   3'- -GUGUAGGCAGCAAAAGGCGCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 53036 0.78 0.61244
Target:  5'- cCAgGUCCGUgGUg--CCGCGG-CUCCa -3'
miRNA:   3'- -GUgUAGGCAgCAaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 156716 0.73 0.841663
Target:  5'- cCACcgAUCgGUCGUUcUCCGCGG-CUCg -3'
miRNA:   3'- -GUG--UAGgCAGCAAaAGGCGCCaGAGg -5'
10779 5' -52 NC_002794.1 + 124417 0.73 0.865038
Target:  5'- gGCG-CCGUCcg---CCGCGGUCUCUc -3'
miRNA:   3'- gUGUaGGCAGcaaaaGGCGCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 81313 0.71 0.912087
Target:  5'- uCACcucCCGUCGgccaagCCGCGGUacgCUCCg -3'
miRNA:   3'- -GUGua-GGCAGCaaaa--GGCGCCA---GAGG- -5'
10779 5' -52 NC_002794.1 + 154328 0.71 0.917891
Target:  5'- gGCGUCgGUCGUcccgggugCCGCGGccgagCUCCc -3'
miRNA:   3'- gUGUAGgCAGCAaaa-----GGCGCCa----GAGG- -5'
10779 5' -52 NC_002794.1 + 180947 0.71 0.923459
Target:  5'- uCGCGUCCG-CGgccgaCGCGGaCUCCg -3'
miRNA:   3'- -GUGUAGGCaGCaaaagGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 66434 0.7 0.943364
Target:  5'- uGCGaCCGUCGUUUcugUCCGCcG-CUCCu -3'
miRNA:   3'- gUGUaGGCAGCAAA---AGGCGcCaGAGG- -5'
10779 5' -52 NC_002794.1 + 30684 0.7 0.951911
Target:  5'- gCACGUCCGgcggaCGUgcacgUUCCGCcGGUUguacgCCa -3'
miRNA:   3'- -GUGUAGGCa----GCAa----AAGGCG-CCAGa----GG- -5'
10779 5' -52 NC_002794.1 + 144696 0.7 0.951911
Target:  5'- uCAUGUCCGUCG---UCCGCGG-CUg- -3'
miRNA:   3'- -GUGUAGGCAGCaaaAGGCGCCaGAgg -5'
10779 5' -52 NC_002794.1 + 105644 0.69 0.966303
Target:  5'- aCGCGuucUCCGUCucg--CCGCGGcgcgCUCCg -3'
miRNA:   3'- -GUGU---AGGCAGcaaaaGGCGCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 41329 0.69 0.974883
Target:  5'- ---cUCCGagGUcuccUCCGgGGUCUCCg -3'
miRNA:   3'- guguAGGCagCAaa--AGGCgCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 46325 0.68 0.979638
Target:  5'- gACGgcgCCGUCG----CCGCGGacggCUCCa -3'
miRNA:   3'- gUGUa--GGCAGCaaaaGGCGCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 67041 0.68 0.98369
Target:  5'- cCGCGUCgCGgaccCGgcgUCCGUGGgCUCCu -3'
miRNA:   3'- -GUGUAG-GCa---GCaaaAGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 104392 0.68 0.98369
Target:  5'- gUACGUCaggugGUCGUccgCCGCGGcCUCg -3'
miRNA:   3'- -GUGUAGg----CAGCAaaaGGCGCCaGAGg -5'
10779 5' -52 NC_002794.1 + 29195 0.68 0.98369
Target:  5'- uCACcaGUCCGUCcg--UCCgGCGGUCggcggCCg -3'
miRNA:   3'- -GUG--UAGGCAGcaaaAGG-CGCCAGa----GG- -5'
10779 5' -52 NC_002794.1 + 100093 0.68 0.984953
Target:  5'- cCACGUCCG-CGUgcggcgcgugcaGCGGUgCUCCa -3'
miRNA:   3'- -GUGUAGGCaGCAaaagg-------CGCCA-GAGG- -5'
10779 5' -52 NC_002794.1 + 40572 0.68 0.985471
Target:  5'- uCGCG-CCGUCcugg-CCGCGGgcccUCUCCu -3'
miRNA:   3'- -GUGUaGGCAGcaaaaGGCGCC----AGAGG- -5'
10779 5' -52 NC_002794.1 + 179778 0.68 0.985471
Target:  5'- gCACGUagcgcccggucaCCGUCGUcaggUUCCacaCGGUCUCUu -3'
miRNA:   3'- -GUGUA------------GGCAGCAa---AAGGc--GCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 21971 0.68 0.985471
Target:  5'- cCGCGgcgCCGUCGUc-UCCGCGacccGUCgCCg -3'
miRNA:   3'- -GUGUa--GGCAGCAaaAGGCGC----CAGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.