Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10779 | 5' | -52 | NC_002794.1 | + | 30684 | 0.7 | 0.951911 |
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Target: 5'- gCACGUCCGgcggaCGUgcacgUUCCGCcGGUUguacgCCa -3' miRNA: 3'- -GUGUAGGCa----GCAa----AAGGCG-CCAGa----GG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 66434 | 0.7 | 0.943364 |
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Target: 5'- uGCGaCCGUCGUUUcugUCCGCcG-CUCCu -3' miRNA: 3'- gUGUaGGCAGCAAA---AGGCGcCaGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 180947 | 0.71 | 0.923459 |
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Target: 5'- uCGCGUCCG-CGgccgaCGCGGaCUCCg -3' miRNA: 3'- -GUGUAGGCaGCaaaagGCGCCaGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 154328 | 0.71 | 0.917891 |
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Target: 5'- gGCGUCgGUCGUcccgggugCCGCGGccgagCUCCc -3' miRNA: 3'- gUGUAGgCAGCAaaa-----GGCGCCa----GAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 81313 | 0.71 | 0.912087 |
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Target: 5'- uCACcucCCGUCGgccaagCCGCGGUacgCUCCg -3' miRNA: 3'- -GUGua-GGCAGCaaaa--GGCGCCA---GAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 124417 | 0.73 | 0.865038 |
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Target: 5'- gGCG-CCGUCcg---CCGCGGUCUCUc -3' miRNA: 3'- gUGUaGGCAGcaaaaGGCGCCAGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 156716 | 0.73 | 0.841663 |
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Target: 5'- cCACcgAUCgGUCGUUcUCCGCGG-CUCg -3' miRNA: 3'- -GUG--UAGgCAGCAAaAGGCGCCaGAGg -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 53036 | 0.78 | 0.61244 |
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Target: 5'- cCAgGUCCGUgGUg--CCGCGG-CUCCa -3' miRNA: 3'- -GUgUAGGCAgCAaaaGGCGCCaGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 89022 | 1.11 | 0.007611 |
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Target: 5'- cCACAUCCGUCGUUUUCCGCGGUCUCCc -3' miRNA: 3'- -GUGUAGGCAGCAAAAGGCGCCAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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