miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 5' -52 NC_002794.1 + 13592 0.66 0.994916
Target:  5'- gCACGaCCGUCG---UCCGgGGagaaCUCCa -3'
miRNA:   3'- -GUGUaGGCAGCaaaAGGCgCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 17416 0.66 0.995617
Target:  5'- ----aCCG-CGgccaUCGCGGUCUCCg -3'
miRNA:   3'- guguaGGCaGCaaaaGGCGCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 21971 0.68 0.985471
Target:  5'- cCGCGgcgCCGUCGUc-UCCGCGacccGUCgCCg -3'
miRNA:   3'- -GUGUa--GGCAGCAaaAGGCGC----CAGaGG- -5'
10779 5' -52 NC_002794.1 + 29195 0.68 0.98369
Target:  5'- uCACcaGUCCGUCcg--UCCgGCGGUCggcggCCg -3'
miRNA:   3'- -GUG--UAGGCAGcaaaAGG-CGCCAGa----GG- -5'
10779 5' -52 NC_002794.1 + 30684 0.7 0.951911
Target:  5'- gCACGUCCGgcggaCGUgcacgUUCCGCcGGUUguacgCCa -3'
miRNA:   3'- -GUGUAGGCa----GCAa----AAGGCG-CCAGa----GG- -5'
10779 5' -52 NC_002794.1 + 32771 0.66 0.993241
Target:  5'- gCGCGUCCGaacgccgguUCGUcaUCCcgguCGGUCUUCg -3'
miRNA:   3'- -GUGUAGGC---------AGCAaaAGGc---GCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 40294 0.67 0.988584
Target:  5'- aCGCGUCCGUCGcg--CCGaggagggaCGGUUUUCc -3'
miRNA:   3'- -GUGUAGGCAGCaaaaGGC--------GCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 40572 0.68 0.985471
Target:  5'- uCGCG-CCGUCcugg-CCGCGGgcccUCUCCu -3'
miRNA:   3'- -GUGUaGGCAGcaaaaGGCGCC----AGAGG- -5'
10779 5' -52 NC_002794.1 + 40615 0.68 0.985471
Target:  5'- gGCGUCCGaC----UCCGCGGagUCCg -3'
miRNA:   3'- gUGUAGGCaGcaaaAGGCGCCagAGG- -5'
10779 5' -52 NC_002794.1 + 41329 0.69 0.974883
Target:  5'- ---cUCCGagGUcuccUCCGgGGUCUCCg -3'
miRNA:   3'- guguAGGCagCAaa--AGGCgCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 41358 0.66 0.996237
Target:  5'- uCACcgCCGUCGgccUUCgcgcuCGCGGcgcCUCCu -3'
miRNA:   3'- -GUGuaGGCAGCaa-AAG-----GCGCCa--GAGG- -5'
10779 5' -52 NC_002794.1 + 46325 0.68 0.979638
Target:  5'- gACGgcgCCGUCG----CCGCGGacggCUCCa -3'
miRNA:   3'- gUGUa--GGCAGCaaaaGGCGCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 53036 0.78 0.61244
Target:  5'- cCAgGUCCGUgGUg--CCGCGG-CUCCa -3'
miRNA:   3'- -GUgUAGGCAgCAaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 63484 0.66 0.994126
Target:  5'- gGCcgCCGUCGacgacgCCGCGGcgucgUCgUCCg -3'
miRNA:   3'- gUGuaGGCAGCaaaa--GGCGCC-----AG-AGG- -5'
10779 5' -52 NC_002794.1 + 66011 0.66 0.996237
Target:  5'- gGCA-CCGaggCGg---CCGCGGUCgucgCCg -3'
miRNA:   3'- gUGUaGGCa--GCaaaaGGCGCCAGa---GG- -5'
10779 5' -52 NC_002794.1 + 66434 0.7 0.943364
Target:  5'- uGCGaCCGUCGUUUcugUCCGCcG-CUCCu -3'
miRNA:   3'- gUGUaGGCAGCAAA---AGGCGcCaGAGG- -5'
10779 5' -52 NC_002794.1 + 67041 0.68 0.98369
Target:  5'- cCGCGUCgCGgaccCGgcgUCCGUGGgCUCCu -3'
miRNA:   3'- -GUGUAG-GCa---GCaaaAGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 68927 0.66 0.996237
Target:  5'- gGCGUCC-UCGUcgcCCGCGGg--CCg -3'
miRNA:   3'- gUGUAGGcAGCAaaaGGCGCCagaGG- -5'
10779 5' -52 NC_002794.1 + 81313 0.71 0.912087
Target:  5'- uCACcucCCGUCGgccaagCCGCGGUacgCUCCg -3'
miRNA:   3'- -GUGua-GGCAGCaaaa--GGCGCCA---GAGG- -5'
10779 5' -52 NC_002794.1 + 89022 1.11 0.007611
Target:  5'- cCACAUCCGUCGUUUUCCGCGGUCUCCc -3'
miRNA:   3'- -GUGUAGGCAGCAAAAGGCGCCAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.