miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10779 5' -52 NC_002794.1 + 98968 0.67 0.991152
Target:  5'- gGCG-CCGUCGgcggcgCCGUGGcCUCg -3'
miRNA:   3'- gUGUaGGCAGCaaaa--GGCGCCaGAGg -5'
10779 5' -52 NC_002794.1 + 100093 0.68 0.984953
Target:  5'- cCACGUCCG-CGUgcggcgcgugcaGCGGUgCUCCa -3'
miRNA:   3'- -GUGUAGGCaGCAaaagg-------CGCCA-GAGG- -5'
10779 5' -52 NC_002794.1 + 104392 0.68 0.98369
Target:  5'- gUACGUCaggugGUCGUccgCCGCGGcCUCg -3'
miRNA:   3'- -GUGUAGg----CAGCAaaaGGCGCCaGAGg -5'
10779 5' -52 NC_002794.1 + 105644 0.69 0.966303
Target:  5'- aCGCGuucUCCGUCucg--CCGCGGcgcgCUCCg -3'
miRNA:   3'- -GUGU---AGGCAGcaaaaGGCGCCa---GAGG- -5'
10779 5' -52 NC_002794.1 + 110222 0.67 0.988584
Target:  5'- gACGUCCGUCcggaucgaGUccUCCGCGGcggaggUUUCCc -3'
miRNA:   3'- gUGUAGGCAG--------CAaaAGGCGCC------AGAGG- -5'
10779 5' -52 NC_002794.1 + 115389 0.66 0.993241
Target:  5'- gACcgCCGgccCGUg--CUGCGGaCUCCa -3'
miRNA:   3'- gUGuaGGCa--GCAaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 124417 0.73 0.865038
Target:  5'- gGCG-CCGUCcg---CCGCGGUCUCUc -3'
miRNA:   3'- gUGUaGGCAGcaaaaGGCGCCAGAGG- -5'
10779 5' -52 NC_002794.1 + 126903 0.67 0.992147
Target:  5'- aCGCGUCCGUCGcgggggagacagcaUGUGGUgUCCu -3'
miRNA:   3'- -GUGUAGGCAGCaaaag---------GCGCCAgAGG- -5'
10779 5' -52 NC_002794.1 + 130655 0.66 0.994916
Target:  5'- cCGCcccgCCGcCGg---CCGCGGgCUCCg -3'
miRNA:   3'- -GUGua--GGCaGCaaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 133374 0.68 0.985471
Target:  5'- -uCGUCgGUCGUcgUCCGgCGGUCa-- -3'
miRNA:   3'- guGUAGgCAGCAaaAGGC-GCCAGagg -5'
10779 5' -52 NC_002794.1 + 137320 0.66 0.996237
Target:  5'- cCACGguUCCG-CGgaaggUUCCGCGGacggCUCg -3'
miRNA:   3'- -GUGU--AGGCaGCaa---AAGGCGCCa---GAGg -5'
10779 5' -52 NC_002794.1 + 138799 0.66 0.993052
Target:  5'- gCACA-CCGUucaaaCGgagaccccgCCGCGGUCUCg -3'
miRNA:   3'- -GUGUaGGCA-----GCaaaa-----GGCGCCAGAGg -5'
10779 5' -52 NC_002794.1 + 141551 0.66 0.996237
Target:  5'- gCGCGaaUCCGccacccgCGg---CCGCGGcCUCCg -3'
miRNA:   3'- -GUGU--AGGCa------GCaaaaGGCGCCaGAGG- -5'
10779 5' -52 NC_002794.1 + 144696 0.7 0.951911
Target:  5'- uCAUGUCCGUCG---UCCGCGG-CUg- -3'
miRNA:   3'- -GUGUAGGCAGCaaaAGGCGCCaGAgg -5'
10779 5' -52 NC_002794.1 + 147623 0.66 0.996237
Target:  5'- gGCAggCGUCGgagagggUCCGCuaUCUCCg -3'
miRNA:   3'- gUGUagGCAGCaaa----AGGCGccAGAGG- -5'
10779 5' -52 NC_002794.1 + 147710 0.66 0.995617
Target:  5'- gCACGUgCGccaGUa--CCGCGGUCUCa -3'
miRNA:   3'- -GUGUAgGCag-CAaaaGGCGCCAGAGg -5'
10779 5' -52 NC_002794.1 + 154328 0.71 0.917891
Target:  5'- gGCGUCgGUCGUcccgggugCCGCGGccgagCUCCc -3'
miRNA:   3'- gUGUAGgCAGCAaaa-----GGCGCCa----GAGG- -5'
10779 5' -52 NC_002794.1 + 156716 0.73 0.841663
Target:  5'- cCACcgAUCgGUCGUUcUCCGCGG-CUCg -3'
miRNA:   3'- -GUG--UAGgCAGCAAaAGGCGCCaGAGg -5'
10779 5' -52 NC_002794.1 + 179104 0.66 0.993241
Target:  5'- -cCGUCCgGUCG---UCCGCGGUC-Cg -3'
miRNA:   3'- guGUAGG-CAGCaaaAGGCGCCAGaGg -5'
10779 5' -52 NC_002794.1 + 179778 0.68 0.985471
Target:  5'- gCACGUagcgcccggucaCCGUCGUcaggUUCCacaCGGUCUCUu -3'
miRNA:   3'- -GUGUA------------GGCAGCAa---AAGGc--GCCAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.