Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10779 | 5' | -52 | NC_002794.1 | + | 180247 | 0.66 | 0.993241 |
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Target: 5'- uCAUAaCCGggaCGUguugUCCGCuucgccGGUCUCCu -3' miRNA: 3'- -GUGUaGGCa--GCAaa--AGGCG------CCAGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 180886 | 0.66 | 0.994453 |
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Target: 5'- gCGCGcCCGgucucggccgcggacUCGg---CCGCGGUCUCg -3' miRNA: 3'- -GUGUaGGC---------------AGCaaaaGGCGCCAGAGg -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 180947 | 0.71 | 0.923459 |
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Target: 5'- uCGCGUCCG-CGgccgaCGCGGaCUCCg -3' miRNA: 3'- -GUGUAGGCaGCaaaagGCGCCaGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 186046 | 0.66 | 0.994126 |
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Target: 5'- gGCuggCCGUCGUUccccggUCCGUGGcCaCCg -3' miRNA: 3'- gUGua-GGCAGCAAa-----AGGCGCCaGaGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 186112 | 0.66 | 0.994126 |
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Target: 5'- uCGCcgCCGcCGgg-UCCcCGGaUCUCCa -3' miRNA: 3'- -GUGuaGGCaGCaaaAGGcGCC-AGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 187344 | 0.66 | 0.996237 |
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Target: 5'- aGCAgcCCGUCGU---UCGCGGUCa-- -3' miRNA: 3'- gUGUa-GGCAGCAaaaGGCGCCAGagg -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 190525 | 0.67 | 0.991152 |
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Target: 5'- cCGCGUgCCGaUCGUcgUCCaccaGCGGUCcgcgUCCg -3' miRNA: 3'- -GUGUA-GGC-AGCAaaAGG----CGCCAG----AGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 190666 | 0.67 | 0.991152 |
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Target: 5'- uCGCGcCCGcCGcg--CCGCcgGGUCUCCa -3' miRNA: 3'- -GUGUaGGCaGCaaaaGGCG--CCAGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 193122 | 0.66 | 0.996237 |
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Target: 5'- uGCA-CCGUCG---UCgGCGGcagCUCCu -3' miRNA: 3'- gUGUaGGCAGCaaaAGgCGCCa--GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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