Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10779 | 5' | -52 | NC_002794.1 | + | 193122 | 0.66 | 0.996237 |
Target: 5'- uGCA-CCGUCG---UCgGCGGcagCUCCu -3' miRNA: 3'- gUGUaGGCAGCaaaAGgCGCCa--GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 190666 | 0.67 | 0.991152 |
Target: 5'- uCGCGcCCGcCGcg--CCGCcgGGUCUCCa -3' miRNA: 3'- -GUGUaGGCaGCaaaaGGCG--CCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 190525 | 0.67 | 0.991152 |
Target: 5'- cCGCGUgCCGaUCGUcgUCCaccaGCGGUCcgcgUCCg -3' miRNA: 3'- -GUGUA-GGC-AGCAaaAGG----CGCCAG----AGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 187344 | 0.66 | 0.996237 |
Target: 5'- aGCAgcCCGUCGU---UCGCGGUCa-- -3' miRNA: 3'- gUGUa-GGCAGCAaaaGGCGCCAGagg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 186112 | 0.66 | 0.994126 |
Target: 5'- uCGCcgCCGcCGgg-UCCcCGGaUCUCCa -3' miRNA: 3'- -GUGuaGGCaGCaaaAGGcGCC-AGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 186046 | 0.66 | 0.994126 |
Target: 5'- gGCuggCCGUCGUUccccggUCCGUGGcCaCCg -3' miRNA: 3'- gUGua-GGCAGCAAa-----AGGCGCCaGaGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 180947 | 0.71 | 0.923459 |
Target: 5'- uCGCGUCCG-CGgccgaCGCGGaCUCCg -3' miRNA: 3'- -GUGUAGGCaGCaaaagGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 180886 | 0.66 | 0.994453 |
Target: 5'- gCGCGcCCGgucucggccgcggacUCGg---CCGCGGUCUCg -3' miRNA: 3'- -GUGUaGGC---------------AGCaaaaGGCGCCAGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 180247 | 0.66 | 0.993241 |
Target: 5'- uCAUAaCCGggaCGUguugUCCGCuucgccGGUCUCCu -3' miRNA: 3'- -GUGUaGGCa--GCAaa--AGGCG------CCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 179778 | 0.68 | 0.985471 |
Target: 5'- gCACGUagcgcccggucaCCGUCGUcaggUUCCacaCGGUCUCUu -3' miRNA: 3'- -GUGUA------------GGCAGCAa---AAGGc--GCCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 179104 | 0.66 | 0.993241 |
Target: 5'- -cCGUCCgGUCG---UCCGCGGUC-Cg -3' miRNA: 3'- guGUAGG-CAGCaaaAGGCGCCAGaGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 156716 | 0.73 | 0.841663 |
Target: 5'- cCACcgAUCgGUCGUUcUCCGCGG-CUCg -3' miRNA: 3'- -GUG--UAGgCAGCAAaAGGCGCCaGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 154328 | 0.71 | 0.917891 |
Target: 5'- gGCGUCgGUCGUcccgggugCCGCGGccgagCUCCc -3' miRNA: 3'- gUGUAGgCAGCAaaa-----GGCGCCa----GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 147710 | 0.66 | 0.995617 |
Target: 5'- gCACGUgCGccaGUa--CCGCGGUCUCa -3' miRNA: 3'- -GUGUAgGCag-CAaaaGGCGCCAGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 147623 | 0.66 | 0.996237 |
Target: 5'- gGCAggCGUCGgagagggUCCGCuaUCUCCg -3' miRNA: 3'- gUGUagGCAGCaaa----AGGCGccAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 144696 | 0.7 | 0.951911 |
Target: 5'- uCAUGUCCGUCG---UCCGCGG-CUg- -3' miRNA: 3'- -GUGUAGGCAGCaaaAGGCGCCaGAgg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 141551 | 0.66 | 0.996237 |
Target: 5'- gCGCGaaUCCGccacccgCGg---CCGCGGcCUCCg -3' miRNA: 3'- -GUGU--AGGCa------GCaaaaGGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 138799 | 0.66 | 0.993052 |
Target: 5'- gCACA-CCGUucaaaCGgagaccccgCCGCGGUCUCg -3' miRNA: 3'- -GUGUaGGCA-----GCaaaa-----GGCGCCAGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 137320 | 0.66 | 0.996237 |
Target: 5'- cCACGguUCCG-CGgaaggUUCCGCGGacggCUCg -3' miRNA: 3'- -GUGU--AGGCaGCaa---AAGGCGCCa---GAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 133374 | 0.68 | 0.985471 |
Target: 5'- -uCGUCgGUCGUcgUCCGgCGGUCa-- -3' miRNA: 3'- guGUAGgCAGCAaaAGGC-GCCAGagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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