Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10779 | 5' | -52 | NC_002794.1 | + | 130655 | 0.66 | 0.994916 |
Target: 5'- cCGCcccgCCGcCGg---CCGCGGgCUCCg -3' miRNA: 3'- -GUGua--GGCaGCaaaaGGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 126903 | 0.67 | 0.992147 |
Target: 5'- aCGCGUCCGUCGcgggggagacagcaUGUGGUgUCCu -3' miRNA: 3'- -GUGUAGGCAGCaaaag---------GCGCCAgAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 124417 | 0.73 | 0.865038 |
Target: 5'- gGCG-CCGUCcg---CCGCGGUCUCUc -3' miRNA: 3'- gUGUaGGCAGcaaaaGGCGCCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 115389 | 0.66 | 0.993241 |
Target: 5'- gACcgCCGgccCGUg--CUGCGGaCUCCa -3' miRNA: 3'- gUGuaGGCa--GCAaaaGGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 110222 | 0.67 | 0.988584 |
Target: 5'- gACGUCCGUCcggaucgaGUccUCCGCGGcggaggUUUCCc -3' miRNA: 3'- gUGUAGGCAG--------CAaaAGGCGCC------AGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 105644 | 0.69 | 0.966303 |
Target: 5'- aCGCGuucUCCGUCucg--CCGCGGcgcgCUCCg -3' miRNA: 3'- -GUGU---AGGCAGcaaaaGGCGCCa---GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 104392 | 0.68 | 0.98369 |
Target: 5'- gUACGUCaggugGUCGUccgCCGCGGcCUCg -3' miRNA: 3'- -GUGUAGg----CAGCAaaaGGCGCCaGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 100093 | 0.68 | 0.984953 |
Target: 5'- cCACGUCCG-CGUgcggcgcgugcaGCGGUgCUCCa -3' miRNA: 3'- -GUGUAGGCaGCAaaagg-------CGCCA-GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 98968 | 0.67 | 0.991152 |
Target: 5'- gGCG-CCGUCGgcggcgCCGUGGcCUCg -3' miRNA: 3'- gUGUaGGCAGCaaaa--GGCGCCaGAGg -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 89022 | 1.11 | 0.007611 |
Target: 5'- cCACAUCCGUCGUUUUCCGCGGUCUCCc -3' miRNA: 3'- -GUGUAGGCAGCAAAAGGCGCCAGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 81313 | 0.71 | 0.912087 |
Target: 5'- uCACcucCCGUCGgccaagCCGCGGUacgCUCCg -3' miRNA: 3'- -GUGua-GGCAGCaaaa--GGCGCCA---GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 68927 | 0.66 | 0.996237 |
Target: 5'- gGCGUCC-UCGUcgcCCGCGGg--CCg -3' miRNA: 3'- gUGUAGGcAGCAaaaGGCGCCagaGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 67041 | 0.68 | 0.98369 |
Target: 5'- cCGCGUCgCGgaccCGgcgUCCGUGGgCUCCu -3' miRNA: 3'- -GUGUAG-GCa---GCaaaAGGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 66434 | 0.7 | 0.943364 |
Target: 5'- uGCGaCCGUCGUUUcugUCCGCcG-CUCCu -3' miRNA: 3'- gUGUaGGCAGCAAA---AGGCGcCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 66011 | 0.66 | 0.996237 |
Target: 5'- gGCA-CCGaggCGg---CCGCGGUCgucgCCg -3' miRNA: 3'- gUGUaGGCa--GCaaaaGGCGCCAGa---GG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 63484 | 0.66 | 0.994126 |
Target: 5'- gGCcgCCGUCGacgacgCCGCGGcgucgUCgUCCg -3' miRNA: 3'- gUGuaGGCAGCaaaa--GGCGCC-----AG-AGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 53036 | 0.78 | 0.61244 |
Target: 5'- cCAgGUCCGUgGUg--CCGCGG-CUCCa -3' miRNA: 3'- -GUgUAGGCAgCAaaaGGCGCCaGAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 46325 | 0.68 | 0.979638 |
Target: 5'- gACGgcgCCGUCG----CCGCGGacggCUCCa -3' miRNA: 3'- gUGUa--GGCAGCaaaaGGCGCCa---GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 41358 | 0.66 | 0.996237 |
Target: 5'- uCACcgCCGUCGgccUUCgcgcuCGCGGcgcCUCCu -3' miRNA: 3'- -GUGuaGGCAGCaa-AAG-----GCGCCa--GAGG- -5' |
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10779 | 5' | -52 | NC_002794.1 | + | 41329 | 0.69 | 0.974883 |
Target: 5'- ---cUCCGagGUcuccUCCGgGGUCUCCg -3' miRNA: 3'- guguAGGCagCAaa--AGGCgCCAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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