Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10779 | 5' | -52 | NC_002794.1 | + | 40615 | 0.68 | 0.985471 |
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Target: 5'- gGCGUCCGaC----UCCGCGGagUCCg -3' miRNA: 3'- gUGUAGGCaGcaaaAGGCGCCagAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 40572 | 0.68 | 0.985471 |
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Target: 5'- uCGCG-CCGUCcugg-CCGCGGgcccUCUCCu -3' miRNA: 3'- -GUGUaGGCAGcaaaaGGCGCC----AGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 40294 | 0.67 | 0.988584 |
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Target: 5'- aCGCGUCCGUCGcg--CCGaggagggaCGGUUUUCc -3' miRNA: 3'- -GUGUAGGCAGCaaaaGGC--------GCCAGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 32771 | 0.66 | 0.993241 |
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Target: 5'- gCGCGUCCGaacgccgguUCGUcaUCCcgguCGGUCUUCg -3' miRNA: 3'- -GUGUAGGC---------AGCAaaAGGc---GCCAGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 30684 | 0.7 | 0.951911 |
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Target: 5'- gCACGUCCGgcggaCGUgcacgUUCCGCcGGUUguacgCCa -3' miRNA: 3'- -GUGUAGGCa----GCAa----AAGGCG-CCAGa----GG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 29195 | 0.68 | 0.98369 |
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Target: 5'- uCACcaGUCCGUCcg--UCCgGCGGUCggcggCCg -3' miRNA: 3'- -GUG--UAGGCAGcaaaAGG-CGCCAGa----GG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 21971 | 0.68 | 0.985471 |
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Target: 5'- cCGCGgcgCCGUCGUc-UCCGCGacccGUCgCCg -3' miRNA: 3'- -GUGUa--GGCAGCAaaAGGCGC----CAGaGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 17416 | 0.66 | 0.995617 |
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Target: 5'- ----aCCG-CGgccaUCGCGGUCUCCg -3' miRNA: 3'- guguaGGCaGCaaaaGGCGCCAGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 13592 | 0.66 | 0.994916 |
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Target: 5'- gCACGaCCGUCG---UCCGgGGagaaCUCCa -3' miRNA: 3'- -GUGUaGGCAGCaaaAGGCgCCa---GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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