Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10779 | 5' | -52 | NC_002794.1 | + | 138799 | 0.66 | 0.993052 |
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Target: 5'- gCACA-CCGUucaaaCGgagaccccgCCGCGGUCUCg -3' miRNA: 3'- -GUGUaGGCA-----GCaaaa-----GGCGCCAGAGg -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 126903 | 0.67 | 0.992147 |
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Target: 5'- aCGCGUCCGUCGcgggggagacagcaUGUGGUgUCCu -3' miRNA: 3'- -GUGUAGGCAGCaaaag---------GCGCCAgAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 115389 | 0.66 | 0.993241 |
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Target: 5'- gACcgCCGgccCGUg--CUGCGGaCUCCa -3' miRNA: 3'- gUGuaGGCa--GCAaaaGGCGCCaGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 32771 | 0.66 | 0.993241 |
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Target: 5'- gCGCGUCCGaacgccgguUCGUcaUCCcgguCGGUCUUCg -3' miRNA: 3'- -GUGUAGGC---------AGCAaaAGGc---GCCAGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 179104 | 0.66 | 0.993241 |
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Target: 5'- -cCGUCCgGUCG---UCCGCGGUC-Cg -3' miRNA: 3'- guGUAGG-CAGCaaaAGGCGCCAGaGg -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 186046 | 0.66 | 0.994126 |
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Target: 5'- gGCuggCCGUCGUUccccggUCCGUGGcCaCCg -3' miRNA: 3'- gUGua-GGCAGCAAa-----AGGCGCCaGaGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 63484 | 0.66 | 0.994126 |
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Target: 5'- gGCcgCCGUCGacgacgCCGCGGcgucgUCgUCCg -3' miRNA: 3'- gUGuaGGCAGCaaaa--GGCGCC-----AG-AGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 186112 | 0.66 | 0.994126 |
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Target: 5'- uCGCcgCCGcCGgg-UCCcCGGaUCUCCa -3' miRNA: 3'- -GUGuaGGCaGCaaaAGGcGCC-AGAGG- -5' |
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| 10779 | 5' | -52 | NC_002794.1 | + | 137320 | 0.66 | 0.996237 |
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Target: 5'- cCACGguUCCG-CGgaaggUUCCGCGGacggCUCg -3' miRNA: 3'- -GUGU--AGGCaGCaa---AAGGCGCCa---GAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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