Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1078 | 3' | -47.5 | NC_000929.1 | + | 22086 | 0.66 | 0.945831 |
Target: 5'- --cAGUcgCUGACCGGCaauguaagUCAcaaGCGAGCc -3' miRNA: 3'- cauUUAuaGGCUGGCCG--------AGU---UGCUUG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 11613 | 0.68 | 0.915993 |
Target: 5'- -cGGGUAUCCcccuGCCaGaGUUCAGCGAGCa -3' miRNA: 3'- caUUUAUAGGc---UGG-C-CGAGUUGCUUG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 21836 | 0.68 | 0.909043 |
Target: 5'- ---cGUAUCCGuuCCGGCUCAcaggccaguGCGGc- -3' miRNA: 3'- cauuUAUAGGCu-GGCCGAGU---------UGCUug -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 23262 | 0.68 | 0.901768 |
Target: 5'- cGUGAAgAagUGACCGGCUC-GCGggUu -3' miRNA: 3'- -CAUUUaUagGCUGGCCGAGuUGCuuG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 15794 | 0.68 | 0.901768 |
Target: 5'- -------aCCGACCGGCU-GugGAAUa -3' miRNA: 3'- cauuuauaGGCUGGCCGAgUugCUUG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 2067 | 0.68 | 0.886264 |
Target: 5'- -----cAUCUGAuaCCGGCacagCAGCGAACu -3' miRNA: 3'- cauuuaUAGGCU--GGCCGa---GUUGCUUG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 19957 | 0.69 | 0.851616 |
Target: 5'- -------cCCGACCGGUaCAACGAuauGCg -3' miRNA: 3'- cauuuauaGGCUGGCCGaGUUGCU---UG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 32877 | 0.7 | 0.802263 |
Target: 5'- gGUuuAUAUCCGuCCGGUUCAgaaGAAUa -3' miRNA: 3'- -CAuuUAUAGGCuGGCCGAGUug-CUUG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 27794 | 0.71 | 0.758901 |
Target: 5'- -aAAAUAUCCGGCuaCGGaUUCAAuCGAGCg -3' miRNA: 3'- caUUUAUAGGCUG--GCC-GAGUU-GCUUG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 28250 | 0.76 | 0.511823 |
Target: 5'- -gGAAgacuUCCgcGACCGGUUCAGCGAAUa -3' miRNA: 3'- caUUUau--AGG--CUGGCCGAGUUGCUUG- -5' |
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1078 | 3' | -47.5 | NC_000929.1 | + | 15247 | 1.1 | 0.003629 |
Target: 5'- gGUAAAUAUCCGACCGGCUCAACGAACc -3' miRNA: 3'- -CAUUUAUAGGCUGGCCGAGUUGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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