miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1078 3' -47.5 NC_000929.1 + 22086 0.66 0.945831
Target:  5'- --cAGUcgCUGACCGGCaauguaagUCAcaaGCGAGCc -3'
miRNA:   3'- cauUUAuaGGCUGGCCG--------AGU---UGCUUG- -5'
1078 3' -47.5 NC_000929.1 + 11613 0.68 0.915993
Target:  5'- -cGGGUAUCCcccuGCCaGaGUUCAGCGAGCa -3'
miRNA:   3'- caUUUAUAGGc---UGG-C-CGAGUUGCUUG- -5'
1078 3' -47.5 NC_000929.1 + 21836 0.68 0.909043
Target:  5'- ---cGUAUCCGuuCCGGCUCAcaggccaguGCGGc- -3'
miRNA:   3'- cauuUAUAGGCu-GGCCGAGU---------UGCUug -5'
1078 3' -47.5 NC_000929.1 + 23262 0.68 0.901768
Target:  5'- cGUGAAgAagUGACCGGCUC-GCGggUu -3'
miRNA:   3'- -CAUUUaUagGCUGGCCGAGuUGCuuG- -5'
1078 3' -47.5 NC_000929.1 + 15794 0.68 0.901768
Target:  5'- -------aCCGACCGGCU-GugGAAUa -3'
miRNA:   3'- cauuuauaGGCUGGCCGAgUugCUUG- -5'
1078 3' -47.5 NC_000929.1 + 2067 0.68 0.886264
Target:  5'- -----cAUCUGAuaCCGGCacagCAGCGAACu -3'
miRNA:   3'- cauuuaUAGGCU--GGCCGa---GUUGCUUG- -5'
1078 3' -47.5 NC_000929.1 + 19957 0.69 0.851616
Target:  5'- -------cCCGACCGGUaCAACGAuauGCg -3'
miRNA:   3'- cauuuauaGGCUGGCCGaGUUGCU---UG- -5'
1078 3' -47.5 NC_000929.1 + 32877 0.7 0.802263
Target:  5'- gGUuuAUAUCCGuCCGGUUCAgaaGAAUa -3'
miRNA:   3'- -CAuuUAUAGGCuGGCCGAGUug-CUUG- -5'
1078 3' -47.5 NC_000929.1 + 27794 0.71 0.758901
Target:  5'- -aAAAUAUCCGGCuaCGGaUUCAAuCGAGCg -3'
miRNA:   3'- caUUUAUAGGCUG--GCC-GAGUU-GCUUG- -5'
1078 3' -47.5 NC_000929.1 + 28250 0.76 0.511823
Target:  5'- -gGAAgacuUCCgcGACCGGUUCAGCGAAUa -3'
miRNA:   3'- caUUUau--AGG--CUGGCCGAGUUGCUUG- -5'
1078 3' -47.5 NC_000929.1 + 15247 1.1 0.003629
Target:  5'- gGUAAAUAUCCGACCGGCUCAACGAACc -3'
miRNA:   3'- -CAUUUAUAGGCUGGCCGAGUUGCUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.