miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10780 3' -53.9 NC_002794.1 + 127687 0.66 0.982969
Target:  5'- cCCGGU-CGGggCGAcguGGguGGGaCAg -3'
miRNA:   3'- aGGCCAuGCCuaGCUu--UCguCCCaGU- -5'
10780 3' -53.9 NC_002794.1 + 37867 0.66 0.982969
Target:  5'- cUCCGGUcgGCGucUCGGGcGGCGGGGgCGg -3'
miRNA:   3'- -AGGCCA--UGCcuAGCUU-UCGUCCCaGU- -5'
10780 3' -53.9 NC_002794.1 + 129246 0.66 0.982969
Target:  5'- cUCCGGcggacuCGGGUCGAgcgccucgucguGAGCGGgccGGUCu -3'
miRNA:   3'- -AGGCCau----GCCUAGCU------------UUCGUC---CCAGu -5'
10780 3' -53.9 NC_002794.1 + 133631 0.66 0.98097
Target:  5'- gUCGGU-CGGugggaaGAAGGuCGGGGUCGg -3'
miRNA:   3'- aGGCCAuGCCuag---CUUUC-GUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 118991 0.66 0.98097
Target:  5'- gUCCGGgcGCGGGgagaCGAgggggaacacgAAGCGGGcGUCGu -3'
miRNA:   3'- -AGGCCa-UGCCUa---GCU-----------UUCGUCC-CAGU- -5'
10780 3' -53.9 NC_002794.1 + 101510 0.66 0.98097
Target:  5'- -gCGGUGCGGcacaCGccGGCGGGGUg- -3'
miRNA:   3'- agGCCAUGCCua--GCuuUCGUCCCAgu -5'
10780 3' -53.9 NC_002794.1 + 5022 0.66 0.9788
Target:  5'- cUCGcGUcCGGggUGggGGgGGGGUCAa -3'
miRNA:   3'- aGGC-CAuGCCuaGCuuUCgUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 26647 0.66 0.9788
Target:  5'- cCCGGacgGCGGccggcUCGucGGCGGGGUgGa -3'
miRNA:   3'- aGGCCa--UGCCu----AGCuuUCGUCCCAgU- -5'
10780 3' -53.9 NC_002794.1 + 61168 0.66 0.9788
Target:  5'- -gCGGUcCGGAUCGgcGGCu-GGUCGc -3'
miRNA:   3'- agGCCAuGCCUAGCuuUCGucCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 156807 0.66 0.9788
Target:  5'- cCCGGUugGGuaggCGAcgugccaaguAGGCAccgaccggGGGUCGg -3'
miRNA:   3'- aGGCCAugCCua--GCU----------UUCGU--------CCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 38636 0.66 0.973921
Target:  5'- gCCGGUGCGGcgCGAcGG-AGGcUCGa -3'
miRNA:   3'- aGGCCAUGCCuaGCUuUCgUCCcAGU- -5'
10780 3' -53.9 NC_002794.1 + 100097 0.66 0.973921
Target:  5'- gUCCGcGUGCGGcgCGu--GCAGcGGUg- -3'
miRNA:   3'- -AGGC-CAUGCCuaGCuuuCGUC-CCAgu -5'
10780 3' -53.9 NC_002794.1 + 185173 0.66 0.973921
Target:  5'- gCCGGcGCGGcgCGGucGGCGcGGUCGg -3'
miRNA:   3'- aGGCCaUGCCuaGCUu-UCGUcCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 4166 0.66 0.973921
Target:  5'- --gGGUAgGGGUCGucgcGguGGGUCGu -3'
miRNA:   3'- aggCCAUgCCUAGCuuu-CguCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 96554 0.66 0.971196
Target:  5'- aCCGGUcgacgaGGAgCGGGAGCGGcuGGUCGu -3'
miRNA:   3'- aGGCCAug----CCUaGCUUUCGUC--CCAGU- -5'
10780 3' -53.9 NC_002794.1 + 86835 0.66 0.970628
Target:  5'- gCCGGgauCGGGUCGgcGGCcccgccgggauuGGGUCu -3'
miRNA:   3'- aGGCCau-GCCUAGCuuUCGu-----------CCCAGu -5'
10780 3' -53.9 NC_002794.1 + 115451 0.67 0.965146
Target:  5'- gCUGGU-CGaGAUCGGAgaGGCGGGGa-- -3'
miRNA:   3'- aGGCCAuGC-CUAGCUU--UCGUCCCagu -5'
10780 3' -53.9 NC_002794.1 + 143012 0.67 0.964821
Target:  5'- cCCGGUcagcgugcggucgGCcGGGUCGAcguGCAGGGcCGc -3'
miRNA:   3'- aGGCCA-------------UG-CCUAGCUuu-CGUCCCaGU- -5'
10780 3' -53.9 NC_002794.1 + 9739 0.67 0.961807
Target:  5'- aCCGGgu-GGGUaggUGggGGgGGGGUCAg -3'
miRNA:   3'- aGGCCaugCCUA---GCuuUCgUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 112746 0.67 0.961807
Target:  5'- -gCGGUGCuccgCGgcGGCGGGGUCGg -3'
miRNA:   3'- agGCCAUGccuaGCuuUCGUCCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.