miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10780 3' -53.9 NC_002794.1 + 9739 0.67 0.961807
Target:  5'- aCCGGgu-GGGUaggUGggGGgGGGGUCAg -3'
miRNA:   3'- aGGCCaugCCUA---GCuuUCgUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 146747 0.67 0.961807
Target:  5'- -aCGGgccGCGGAUCGggGG-AGGGaCGa -3'
miRNA:   3'- agGCCa--UGCCUAGCuuUCgUCCCaGU- -5'
10780 3' -53.9 NC_002794.1 + 159891 0.67 0.95448
Target:  5'- aUCGGaggGCGGGguagCGAAggguAGguGGGUCGg -3'
miRNA:   3'- aGGCCa--UGCCUa---GCUU----UCguCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 87044 0.67 0.95448
Target:  5'- aCCGGcGCGGcUCG-GGGCcGGGUCc -3'
miRNA:   3'- aGGCCaUGCCuAGCuUUCGuCCCAGu -5'
10780 3' -53.9 NC_002794.1 + 148998 0.68 0.946256
Target:  5'- cUCGGU-CGGAUCGAcuGUuucaaccGGGUCAu -3'
miRNA:   3'- aGGCCAuGCCUAGCUuuCGu------CCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 25117 0.68 0.9418
Target:  5'- aCCGGU-CGaGAUCGA--GCGGGG-CAc -3'
miRNA:   3'- aGGCCAuGC-CUAGCUuuCGUCCCaGU- -5'
10780 3' -53.9 NC_002794.1 + 122949 0.68 0.9418
Target:  5'- aCCGGUGCGGcuggagCGuGAGCcuGGGGUg- -3'
miRNA:   3'- aGGCCAUGCCua----GCuUUCG--UCCCAgu -5'
10780 3' -53.9 NC_002794.1 + 183914 0.68 0.932187
Target:  5'- aUCUGGgacACGG-UCcccGGCAGGGUCAc -3'
miRNA:   3'- -AGGCCa--UGCCuAGcuuUCGUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 21511 0.69 0.918282
Target:  5'- cUCCGGcucgaggacggGCGGAUCGGgaucggcuagcuccgGAGCGGGGa-- -3'
miRNA:   3'- -AGGCCa----------UGCCUAGCU---------------UUCGUCCCagu -5'
10780 3' -53.9 NC_002794.1 + 13097 0.69 0.904039
Target:  5'- cCCGGgggACGaGGUgCGuucGGCGGGGUCGc -3'
miRNA:   3'- aGGCCa--UGC-CUA-GCuu-UCGUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 52874 0.69 0.897711
Target:  5'- uUCCGGUACacc-CGAuGGUGGGGUCGa -3'
miRNA:   3'- -AGGCCAUGccuaGCUuUCGUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 138652 0.7 0.877373
Target:  5'- gUCCGGUcggucgaucuGCGGAUUGGucugcguGGCGgcGGGUCGu -3'
miRNA:   3'- -AGGCCA----------UGCCUAGCUu------UCGU--CCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 191872 0.7 0.870157
Target:  5'- gCCGGcgGCGGAgggggcggCGGAGGCGGGaUCGg -3'
miRNA:   3'- aGGCCa-UGCCUa-------GCUUUCGUCCcAGU- -5'
10780 3' -53.9 NC_002794.1 + 105802 0.71 0.847266
Target:  5'- cUCGGagACGGAcCGAAAGCGcgaccGGGUCGg -3'
miRNA:   3'- aGGCCa-UGCCUaGCUUUCGU-----CCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 77656 0.71 0.847266
Target:  5'- aCCuGUGCGGcccgCGGGucuGCGGGGUCAu -3'
miRNA:   3'- aGGcCAUGCCua--GCUUu--CGUCCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 178100 0.71 0.839242
Target:  5'- cCCGGUACGGuGUCGggGuGCc-GGUCGu -3'
miRNA:   3'- aGGCCAUGCC-UAGCuuU-CGucCCAGU- -5'
10780 3' -53.9 NC_002794.1 + 142225 0.72 0.805365
Target:  5'- -gCGGUGCGGGgagcggCGGAGGCGGcGGUgAg -3'
miRNA:   3'- agGCCAUGCCUa-----GCUUUCGUC-CCAgU- -5'
10780 3' -53.9 NC_002794.1 + 20392 0.73 0.759606
Target:  5'- -gCGGUGCGGcgggacCGGGAGCGGGGcCAc -3'
miRNA:   3'- agGCCAUGCCua----GCUUUCGUCCCaGU- -5'
10780 3' -53.9 NC_002794.1 + 116374 0.73 0.759606
Target:  5'- aCCGGUcgguggcguGCGGGUCGAAgacgaagguguGGCGGGGcgCGa -3'
miRNA:   3'- aGGCCA---------UGCCUAGCUU-----------UCGUCCCa-GU- -5'
10780 3' -53.9 NC_002794.1 + 109060 0.73 0.730746
Target:  5'- aCCuGUGCGGAccaGGAAGgGGGGUCAc -3'
miRNA:   3'- aGGcCAUGCCUag-CUUUCgUCCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.