miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10780 5' -56.3 NC_002794.1 + 71002 0.66 0.927028
Target:  5'- cCGUGaGCCcGGaCCGCAGGUACUGc- -3'
miRNA:   3'- -GCGUaCGGaCCaGGCGUCUAUGGCaa -5'
10780 5' -56.3 NC_002794.1 + 113053 0.66 0.921633
Target:  5'- gGCGcGCCUcgaGGUcCCGCAGGUACUc-- -3'
miRNA:   3'- gCGUaCGGA---CCA-GGCGUCUAUGGcaa -5'
10780 5' -56.3 NC_002794.1 + 108030 0.66 0.921633
Target:  5'- uGCucgGCCUGGaaUUC-CGGGUGCCGUUc -3'
miRNA:   3'- gCGua-CGGACC--AGGcGUCUAUGGCAA- -5'
10780 5' -56.3 NC_002794.1 + 91420 0.66 0.921633
Target:  5'- aGCGUGaagCUGGcgCCGCAGAaGCgGUa -3'
miRNA:   3'- gCGUACg--GACCa-GGCGUCUaUGgCAa -5'
10780 5' -56.3 NC_002794.1 + 141645 0.66 0.916002
Target:  5'- gGCcgGCgUGG-CCGCGGccGCCGg- -3'
miRNA:   3'- gCGuaCGgACCaGGCGUCuaUGGCaa -5'
10780 5' -56.3 NC_002794.1 + 185050 0.66 0.916002
Target:  5'- aGCAacaGCgUGGUCUGCAGccGCCGc- -3'
miRNA:   3'- gCGUa--CGgACCAGGCGUCuaUGGCaa -5'
10780 5' -56.3 NC_002794.1 + 44013 0.67 0.891155
Target:  5'- gCGCG-GCCgGcGUCCGCAGA--CCGUc -3'
miRNA:   3'- -GCGUaCGGaC-CAGGCGUCUauGGCAa -5'
10780 5' -56.3 NC_002794.1 + 13020 0.67 0.884374
Target:  5'- aCGCAcgcGCCUGuUCCuCGGGUACCGg- -3'
miRNA:   3'- -GCGUa--CGGACcAGGcGUCUAUGGCaa -5'
10780 5' -56.3 NC_002794.1 + 101602 0.67 0.876661
Target:  5'- gCGgGUGCC-GGcCCGCcgggcggGGGUGCCGUUu -3'
miRNA:   3'- -GCgUACGGaCCaGGCG-------UCUAUGGCAA- -5'
10780 5' -56.3 NC_002794.1 + 124888 0.68 0.831033
Target:  5'- uGCGUGCacggccaggagCUGGUCCGC-GAgACCGg- -3'
miRNA:   3'- gCGUACG-----------GACCAGGCGuCUaUGGCaa -5'
10780 5' -56.3 NC_002794.1 + 88456 1.06 0.004801
Target:  5'- cCGCAUGCCUGGUCCGCAGAUACCGUUg -3'
miRNA:   3'- -GCGUACGGACCAGGCGUCUAUGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.