miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10781 3' -53.5 NC_002794.1 + 141420 0.66 0.983827
Target:  5'- uGACCUcgggggcggcgGGGGCgCCGGggGcg-CCGGGa -3'
miRNA:   3'- -CUGGG-----------UCUUG-GGCCuuUaaaGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 176894 0.66 0.983827
Target:  5'- gGGCUCgagGGGACCgGuGGGAUUgCCGGGUg -3'
miRNA:   3'- -CUGGG---UCUUGGgC-CUUUAAaGGCCCA- -5'
10781 3' -53.5 NC_002794.1 + 70208 0.66 0.983827
Target:  5'- aGAUCCAGcucGCCCGGAcgg--UCGGGc -3'
miRNA:   3'- -CUGGGUCu--UGGGCCUuuaaaGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 35977 0.66 0.983453
Target:  5'- gGGCCCGcucgcGGACCCGGuuuuauugUCgCGGGg -3'
miRNA:   3'- -CUGGGU-----CUUGGGCCuuuaa---AG-GCCCa -5'
10781 3' -53.5 NC_002794.1 + 35644 0.66 0.983263
Target:  5'- aGACCCGGGacgggcGCCCGGucuccGAcgUggucaacgaggucaUCCGGGa -3'
miRNA:   3'- -CUGGGUCU------UGGGCC-----UUuaA--------------AGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 49150 0.66 0.981889
Target:  5'- cGACCCGaAACCagCGGGccg-UCCGGGa -3'
miRNA:   3'- -CUGGGUcUUGG--GCCUuuaaAGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 133 0.66 0.979782
Target:  5'- --aCCGGAGCCCGGGAccg-CCgcaGGGg -3'
miRNA:   3'- cugGGUCUUGGGCCUUuaaaGG---CCCa -5'
10781 3' -53.5 NC_002794.1 + 115604 0.66 0.977497
Target:  5'- cGACCCGcucGCCCGGcg----CCGGGa -3'
miRNA:   3'- -CUGGGUcu-UGGGCCuuuaaaGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 87616 0.66 0.976776
Target:  5'- uACCCAGcuACCCcguacuagcauaccGGAAggguuuAUUUCCGGGa -3'
miRNA:   3'- cUGGGUCu-UGGG--------------CCUU------UAAAGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 114685 0.66 0.975789
Target:  5'- gGACCgCAGGGCCCGGAccuccugcgagacGgacggcggcggcggcGgcUCCGGGUu -3'
miRNA:   3'- -CUGG-GUCUUGGGCCU-------------U---------------UaaAGGCCCA- -5'
10781 3' -53.5 NC_002794.1 + 178802 0.67 0.972367
Target:  5'- cGGCUCG--GCCCGGggGga-CCGGGc -3'
miRNA:   3'- -CUGGGUcuUGGGCCuuUaaaGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 41690 0.67 0.972367
Target:  5'- cGCCCGGAcCgCCGGAucgucCCGGGc -3'
miRNA:   3'- cUGGGUCUuG-GGCCUuuaaaGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 185801 0.67 0.966442
Target:  5'- gGACCCAcauCgCCGGGAuc-UCCGGGa -3'
miRNA:   3'- -CUGGGUcuuG-GGCCUUuaaAGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 30055 0.67 0.963166
Target:  5'- aGACCCGG-GCCCGcGggG--UCCGGu- -3'
miRNA:   3'- -CUGGGUCuUGGGC-CuuUaaAGGCCca -5'
10781 3' -53.5 NC_002794.1 + 35113 0.67 0.963166
Target:  5'- uGACCgAGAACCgGG-----UCUGGGUg -3'
miRNA:   3'- -CUGGgUCUUGGgCCuuuaaAGGCCCA- -5'
10781 3' -53.5 NC_002794.1 + 157918 0.67 0.959312
Target:  5'- aGCCCGGAAUCCcaucaucGGcAAUUaagCCGGGUa -3'
miRNA:   3'- cUGGGUCUUGGG-------CCuUUAAa--GGCCCA- -5'
10781 3' -53.5 NC_002794.1 + 79252 0.68 0.955959
Target:  5'- aGACUCAGAcauGCCCcGAuucuaUCCGGGUc -3'
miRNA:   3'- -CUGGGUCU---UGGGcCUuuaa-AGGCCCA- -5'
10781 3' -53.5 NC_002794.1 + 181638 0.68 0.952018
Target:  5'- ---gCGGAGCCCGGGc---UCCGGGa -3'
miRNA:   3'- cuggGUCUUGGGCCUuuaaAGGCCCa -5'
10781 3' -53.5 NC_002794.1 + 143002 0.68 0.952018
Target:  5'- uGGCCaGGAACCCGGucagcgugcggucggCCGGGUc -3'
miRNA:   3'- -CUGGgUCUUGGGCCuuuaaa---------GGCCCA- -5'
10781 3' -53.5 NC_002794.1 + 153284 0.68 0.952018
Target:  5'- cGACCCGucGCCCGaGAcgcaggCCGGGg -3'
miRNA:   3'- -CUGGGUcuUGGGC-CUuuaaa-GGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.