miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10781 5' -50.5 NC_002794.1 + 30054 0.66 0.998474
Target:  5'- gAGACCCGGGcccgcGGggUCCGGucgcccggucgacgaGGCGcGCGg -3'
miRNA:   3'- -UCUGGGCCU-----UUaaAGGUC---------------CCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 35816 0.66 0.998358
Target:  5'- cGGACCCGG---UUUCCGGGccGCcgccACGa -3'
miRNA:   3'- -UCUGGGCCuuuAAAGGUCC--CGuu--UGC- -5'
10781 5' -50.5 NC_002794.1 + 147214 0.66 0.998358
Target:  5'- cGGGCCgGGG-----CCGGGGCGuuGGCGc -3'
miRNA:   3'- -UCUGGgCCUuuaaaGGUCCCGU--UUGC- -5'
10781 5' -50.5 NC_002794.1 + 106365 0.66 0.997928
Target:  5'- cGGGCgCCGGuucgcgcggAGGGCAGACGg -3'
miRNA:   3'- -UCUG-GGCCuuuaaagg-UCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 112220 0.66 0.99766
Target:  5'- cGGCCCGcuccAGGgcgUCCAGGGCcgccgcGAACGc -3'
miRNA:   3'- uCUGGGCc---UUUaa-AGGUCCCG------UUUGC- -5'
10781 5' -50.5 NC_002794.1 + 153041 0.66 0.99766
Target:  5'- cGACgCGGG----UCCcucGGGCGGACGg -3'
miRNA:   3'- uCUGgGCCUuuaaAGGu--CCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 108034 0.66 0.99766
Target:  5'- cGGCCUGGAA--UUCCGGGuGCcguuCGu -3'
miRNA:   3'- uCUGGGCCUUuaAAGGUCC-CGuuu-GC- -5'
10781 5' -50.5 NC_002794.1 + 67049 0.66 0.997227
Target:  5'- cGGACCCGGcg---UCCGuGGGCuccuCGc -3'
miRNA:   3'- -UCUGGGCCuuuaaAGGU-CCCGuuu-GC- -5'
10781 5' -50.5 NC_002794.1 + 32586 0.66 0.997227
Target:  5'- cGGugCCGGGGccggggCCGGGGCcgGGGCc -3'
miRNA:   3'- -UCugGGCCUUuaaa--GGUCCCG--UUUGc -5'
10781 5' -50.5 NC_002794.1 + 70293 0.66 0.997227
Target:  5'- cAGGCCgGGggGgc-CCGGGcGCGAAg- -3'
miRNA:   3'- -UCUGGgCCuuUaaaGGUCC-CGUUUgc -5'
10781 5' -50.5 NC_002794.1 + 139561 0.66 0.996937
Target:  5'- uAGAUCCGGcggcugcuguuuuGUUUCCGGcGGUGGAUGa -3'
miRNA:   3'- -UCUGGGCCuu-----------UAAAGGUC-CCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 49040 0.66 0.99673
Target:  5'- cGGCgCGGucGUcagcgUCCAGGGCGcGCa -3'
miRNA:   3'- uCUGgGCCuuUAa----AGGUCCCGUuUGc -5'
10781 5' -50.5 NC_002794.1 + 64788 0.67 0.996161
Target:  5'- cGACgCCGG----UUCCGcGGCGAGCGa -3'
miRNA:   3'- uCUG-GGCCuuuaAAGGUcCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 68759 0.67 0.996161
Target:  5'- uGAgCCGGGccg--CCGGGGCGccgGACGc -3'
miRNA:   3'- uCUgGGCCUuuaaaGGUCCCGU---UUGC- -5'
10781 5' -50.5 NC_002794.1 + 123679 0.67 0.996161
Target:  5'- cGGCCCGGG-----CUGGGaGCAGGCGc -3'
miRNA:   3'- uCUGGGCCUuuaaaGGUCC-CGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 131182 0.67 0.996038
Target:  5'- cGAgCCGGAGAcagcacggcgCCGGGGCG-GCGc -3'
miRNA:   3'- uCUgGGCCUUUaaa-------GGUCCCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 40065 0.67 0.995513
Target:  5'- uGACUCGGggGagggaaaCCGGGGCGGGg- -3'
miRNA:   3'- uCUGGGCCuuUaaa----GGUCCCGUUUgc -5'
10781 5' -50.5 NC_002794.1 + 5765 0.67 0.995084
Target:  5'- aAGuACCCGGGAGUUgucaaaggagagagCCGGGGUcuGACc -3'
miRNA:   3'- -UC-UGGGCCUUUAAa-------------GGUCCCGu-UUGc -5'
10781 5' -50.5 NC_002794.1 + 119284 0.67 0.99478
Target:  5'- gGGugUugUGGAAccaggCCAGGGCGAGCu -3'
miRNA:   3'- -UCugG--GCCUUuaaa-GGUCCCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 104434 0.67 0.993951
Target:  5'- cGGCCCGGAcgccgCCGcGGGCGgcccgagcccgGGCGg -3'
miRNA:   3'- uCUGGGCCUuuaaaGGU-CCCGU-----------UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.