Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10781 | 5' | -50.5 | NC_002794.1 | + | 30054 | 0.66 | 0.998474 |
Target: 5'- gAGACCCGGGcccgcGGggUCCGGucgcccggucgacgaGGCGcGCGg -3' miRNA: 3'- -UCUGGGCCU-----UUaaAGGUC---------------CCGUuUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 49040 | 0.66 | 0.99673 |
Target: 5'- cGGCgCGGucGUcagcgUCCAGGGCGcGCa -3' miRNA: 3'- uCUGgGCCuuUAa----AGGUCCCGUuUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 139561 | 0.66 | 0.996937 |
Target: 5'- uAGAUCCGGcggcugcuguuuuGUUUCCGGcGGUGGAUGa -3' miRNA: 3'- -UCUGGGCCuu-----------UAAAGGUC-CCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 70293 | 0.66 | 0.997227 |
Target: 5'- cAGGCCgGGggGgc-CCGGGcGCGAAg- -3' miRNA: 3'- -UCUGGgCCuuUaaaGGUCC-CGUUUgc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 32586 | 0.66 | 0.997227 |
Target: 5'- cGGugCCGGGGccggggCCGGGGCcgGGGCc -3' miRNA: 3'- -UCugGGCCUUuaaa--GGUCCCG--UUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 112220 | 0.66 | 0.99766 |
Target: 5'- cGGCCCGcuccAGGgcgUCCAGGGCcgccgcGAACGc -3' miRNA: 3'- uCUGGGCc---UUUaa-AGGUCCCG------UUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 67049 | 0.66 | 0.997227 |
Target: 5'- cGGACCCGGcg---UCCGuGGGCuccuCGc -3' miRNA: 3'- -UCUGGGCCuuuaaAGGU-CCCGuuu-GC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 153041 | 0.66 | 0.99766 |
Target: 5'- cGACgCGGG----UCCcucGGGCGGACGg -3' miRNA: 3'- uCUGgGCCUuuaaAGGu--CCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 108034 | 0.66 | 0.99766 |
Target: 5'- cGGCCUGGAA--UUCCGGGuGCcguuCGu -3' miRNA: 3'- uCUGGGCCUUuaAAGGUCC-CGuuu-GC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 106365 | 0.66 | 0.997928 |
Target: 5'- cGGGCgCCGGuucgcgcggAGGGCAGACGg -3' miRNA: 3'- -UCUG-GGCCuuuaaagg-UCCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 147214 | 0.66 | 0.998358 |
Target: 5'- cGGGCCgGGG-----CCGGGGCGuuGGCGc -3' miRNA: 3'- -UCUGGgCCUuuaaaGGUCCCGU--UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 35816 | 0.66 | 0.998358 |
Target: 5'- cGGACCCGG---UUUCCGGGccGCcgccACGa -3' miRNA: 3'- -UCUGGGCCuuuAAAGGUCC--CGuu--UGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 129331 | 0.67 | 0.993021 |
Target: 5'- -cGCCCGGGgcggcGGUUUCCAgaacGGGguGACu -3' miRNA: 3'- ucUGGGCCU-----UUAAAGGU----CCCguUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 5765 | 0.67 | 0.995084 |
Target: 5'- aAGuACCCGGGAGUUgucaaaggagagagCCGGGGUcuGACc -3' miRNA: 3'- -UC-UGGGCCUUUAAa-------------GGUCCCGu-UUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 119284 | 0.67 | 0.99478 |
Target: 5'- gGGugUugUGGAAccaggCCAGGGCGAGCu -3' miRNA: 3'- -UCugG--GCCUUuaaa-GGUCCCGUUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 40065 | 0.67 | 0.995513 |
Target: 5'- uGACUCGGggGagggaaaCCGGGGCGGGg- -3' miRNA: 3'- uCUGGGCCuuUaaa----GGUCCCGUUUgc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 131182 | 0.67 | 0.996038 |
Target: 5'- cGAgCCGGAGAcagcacggcgCCGGGGCG-GCGc -3' miRNA: 3'- uCUgGGCCUUUaaa-------GGUCCCGUuUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 123679 | 0.67 | 0.996161 |
Target: 5'- cGGCCCGGG-----CUGGGaGCAGGCGc -3' miRNA: 3'- uCUGGGCCUuuaaaGGUCC-CGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 68759 | 0.67 | 0.996161 |
Target: 5'- uGAgCCGGGccg--CCGGGGCGccgGACGc -3' miRNA: 3'- uCUgGGCCUuuaaaGGUCCCGU---UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 104434 | 0.67 | 0.993951 |
Target: 5'- cGGCCCGGAcgccgCCGcGGGCGgcccgagcccgGGCGg -3' miRNA: 3'- uCUGGGCCUuuaaaGGU-CCCGU-----------UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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