miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10781 5' -50.5 NC_002794.1 + 131182 0.67 0.996038
Target:  5'- cGAgCCGGAGAcagcacggcgCCGGGGCG-GCGc -3'
miRNA:   3'- uCUgGGCCUUUaaa-------GGUCCCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 123679 0.67 0.996161
Target:  5'- cGGCCCGGG-----CUGGGaGCAGGCGc -3'
miRNA:   3'- uCUGGGCCUuuaaaGGUCC-CGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 68759 0.67 0.996161
Target:  5'- uGAgCCGGGccg--CCGGGGCGccgGACGc -3'
miRNA:   3'- uCUgGGCCUuuaaaGGUCCCGU---UUGC- -5'
10781 5' -50.5 NC_002794.1 + 64788 0.67 0.996161
Target:  5'- cGACgCCGG----UUCCGcGGCGAGCGa -3'
miRNA:   3'- uCUG-GGCCuuuaAAGGUcCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 109120 0.68 0.991643
Target:  5'- cGGugCCGGu-GUUUCCgaacggaccgaggaGGGGgAGGCGg -3'
miRNA:   3'- -UCugGGCCuuUAAAGG--------------UCCCgUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 95885 0.68 0.988101
Target:  5'- cGACCCGGcgg---CgAGGGCGcACGa -3'
miRNA:   3'- uCUGGGCCuuuaaaGgUCCCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 98763 0.68 0.989528
Target:  5'- aGGugCUGGAGcucuacUCgCGGGGCGAGCu -3'
miRNA:   3'- -UCugGGCCUUuaa---AG-GUCCCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 43677 0.68 0.987645
Target:  5'- cGGGCCCGGGcgcggaccaugccgGAgaUCCAGGuGguGAUGa -3'
miRNA:   3'- -UCUGGGCCU--------------UUaaAGGUCC-CguUUGC- -5'
10781 5' -50.5 NC_002794.1 + 113651 0.68 0.989663
Target:  5'- cGGCCCGGcguccucggcgUCCAGcgcGGCGAGCa -3'
miRNA:   3'- uCUGGGCCuuuaa------AGGUC---CCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 124164 0.68 0.989528
Target:  5'- gGGGCCCGGGAGagcgUCGGGGaggGGACu -3'
miRNA:   3'- -UCUGGGCCUUUaaa-GGUCCCg--UUUGc -5'
10781 5' -50.5 NC_002794.1 + 186202 0.68 0.991979
Target:  5'- -aACCgCGGGcc---CCAGGGCAGAUGg -3'
miRNA:   3'- ucUGG-GCCUuuaaaGGUCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 121493 0.68 0.991979
Target:  5'- cGGACgCGGccuccgCCGGGGCGacGACGu -3'
miRNA:   3'- -UCUGgGCCuuuaaaGGUCCCGU--UUGC- -5'
10781 5' -50.5 NC_002794.1 + 93581 0.68 0.991979
Target:  5'- -aGCCgGGAGGUcUUCCAcuucGGGCAGAuCGg -3'
miRNA:   3'- ucUGGgCCUUUA-AAGGU----CCCGUUU-GC- -5'
10781 5' -50.5 NC_002794.1 + 85952 0.68 0.991979
Target:  5'- cGACCCGGAA-----CGGGGCc-GCGg -3'
miRNA:   3'- uCUGGGCCUUuaaagGUCCCGuuUGC- -5'
10781 5' -50.5 NC_002794.1 + 1432 0.69 0.976165
Target:  5'- cGACCgGGAGGgggaCCGGGGC--GCGu -3'
miRNA:   3'- uCUGGgCCUUUaaa-GGUCCCGuuUGC- -5'
10781 5' -50.5 NC_002794.1 + 118253 0.69 0.978599
Target:  5'- cGGgCUGGAGGUcggCCGGGGCGgcGGCGc -3'
miRNA:   3'- uCUgGGCCUUUAaa-GGUCCCGU--UUGC- -5'
10781 5' -50.5 NC_002794.1 + 142430 0.69 0.982908
Target:  5'- cGAUuaGGAAAUUcUCCgAGGGUAAGCa -3'
miRNA:   3'- uCUGggCCUUUAA-AGG-UCCCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 133658 0.69 0.978599
Target:  5'- cGGACCCGaGGGAgggUCgCGGGGUuuuGACa -3'
miRNA:   3'- -UCUGGGC-CUUUaa-AG-GUCCCGu--UUGc -5'
10781 5' -50.5 NC_002794.1 + 117207 0.69 0.978599
Target:  5'- cGGGCCCGGgcGgcUCCggccgcgucAGGGCGAcCGa -3'
miRNA:   3'- -UCUGGGCCuuUaaAGG---------UCCCGUUuGC- -5'
10781 5' -50.5 NC_002794.1 + 105540 0.7 0.964388
Target:  5'- gAGAUCCGGcggcggCUcGGGCGAACGg -3'
miRNA:   3'- -UCUGGGCCuuuaaaGGuCCCGUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.